Package ubic.gemma.core.analysis.preprocess.slice

Class BulkDataSlicerUtils

java.lang.Object

ubic.gemma.core.analysis.preprocess.slice.BulkDataSlicerUtils

public class BulkDataSlicerUtils
extends Object

Slice bulk data vectors.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
BulkDataSlicerUtils()

Method Summary

Modifier and Type	Method	Description
static <T extends BulkExpressionDataVector> Function<T,boolean[]>	createBooleanSlicer(List<BioAssay> assays, boolean allowMissing)	Create a slicer function for bulk data vectors that can be applied on a Stream.
static <T extends BulkExpressionDataVector> Function<T,double[]>	createDoubleSlicer(List<BioAssay> assays, boolean allowMissing)	Create a slicer function for bulk data vectors that can be applied on a Stream.
static <T extends BulkExpressionDataVector> Function<T,T>	createSlicer(List<BioAssay> assays, Class<T> vectorType, boolean allowMissing)	Create a slicer function for bulk data vectors that can be applied on a Stream.
static <T extends BulkExpressionDataVector> Collection<T>	slice(Collection<T> vectors, List<BioAssay> assays, Class<T> vectorType, boolean allowMissing)	Slice a collection of bulk data vectors.
static <T extends BulkExpressionDataVector> List<boolean[]>	sliceBooleans(Collection<T> vectors, List<BioAssay> assays, boolean allowMissing)	Slice a collection of bulk data vectors into boolean arrays.
static <T extends BulkExpressionDataVector> List<double[]>	sliceDoubles(Collection<T> vectors, List<BioAssay> assays, boolean allowMissing)	Slice a collection of bulk data vectors into double arrays.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BulkDataSlicerUtils

public BulkDataSlicerUtils()

Method Details

slice

public static <T extends BulkExpressionDataVector>
Collection<T> slice(Collection<T> vectors,
 List<BioAssay> assays,
 Class<T> vectorType,
 boolean allowMissing)

Slice a collection of bulk data vectors.

Parameters:

vectorType - the type of vector produced

createSlicer

public static <T extends BulkExpressionDataVector>
Function<T,T> createSlicer(List<BioAssay> assays,
 Class<T> vectorType,
 boolean allowMissing)

Create a slicer function for bulk data vectors that can be applied on a Stream.

sliceDoubles

public static <T extends BulkExpressionDataVector>
List<double[]> sliceDoubles(Collection<T> vectors,
 List<BioAssay> assays,
 boolean allowMissing)

Slice a collection of bulk data vectors into double arrays.

createDoubleSlicer

public static <T extends BulkExpressionDataVector>
Function<T,double[]> createDoubleSlicer(List<BioAssay> assays,
 boolean allowMissing)

Create a slicer function for bulk data vectors that can be applied on a Stream.

sliceBooleans

public static <T extends BulkExpressionDataVector>
List<boolean[]> sliceBooleans(Collection<T> vectors,
 List<BioAssay> assays,
 boolean allowMissing)

Slice a collection of bulk data vectors into boolean arrays.

createBooleanSlicer

public static <T extends BulkExpressionDataVector>
Function<T,boolean[]> createBooleanSlicer(List<BioAssay> assays,
 boolean allowMissing)

Create a slicer function for bulk data vectors that can be applied on a Stream.