Class BlatResult2Psl


  • public class BlatResult2Psl
    extends Object
    Used to convert BlatResult objects into PSL lines that can be displayed in the UCSC Genome Browser.
    Author:
    pavlidis
    • Constructor Detail

      • BlatResult2Psl

        public BlatResult2Psl()
    • Method Detail

      • blatResult2PslTrack

        public static String blatResult2PslTrack​(BlatResult blatResult)
        Creates text that can be displayed directly as a track in UCSC, using their hgTracks program. golden path custom track help.
        Parameters:
        blatResult - blat result
        Returns:
        psl track