Package ubic.gemma.core.analysis.sequence

Class BlatResult2Psl

java.lang.Object

ubic.gemma.core.analysis.sequence.BlatResult2Psl

public class BlatResult2Psl
extends Object

Used to convert BlatResult objects into PSL lines that can be displayed in the UCSC Genome Browser.

Author:

pavlidis

Constructor Summary

Constructors

Constructor	Description
BlatResult2Psl()

Method Summary

Modifier and Type	Method	Description
static String	blatResult2PslTrack(BlatResult blatResult)	Creates text that can be displayed directly as a track in UCSC, using their hgTracks program.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BlatResult2Psl

public BlatResult2Psl()

Method Details

blatResult2PslTrack

public static String blatResult2PslTrack(BlatResult blatResult)

Creates text that can be displayed directly as a track in UCSC, using their hgTracks program. golden path custom track help.

Parameters:

blatResult - blat result

Returns:

psl track