Package ubic.gemma.core.analysis.singleCell.aggregate

Class SingleCellAggregationConfig

java.lang.Object
ubic.gemma.core.analysis.singleCell.aggregate.SingleCellAggregationConfig
public class SingleCellAggregationConfig extends Object
Configuration for aggregating single-cell data.
Author:
poirigui

  • Method Details

    • builder

      public static SingleCellAggregationConfig.SingleCellAggregationConfigBuilder builder()

    • getMask

      @Nullable public CellLevelCharacteristics getMask()
      Categorical mask to use on data.

      The category of the characteristics must be Categories.MASK.

    • isMakePreferred

      public boolean isMakePreferred()
      Make the resulting QT preferred.

    • isAdjustLibrarySizes

      public boolean isAdjustLibrarySizes()
      Perform adjustment of library sizes to better reflect the number of reads in the source sample.

    • isIncludeMaskedCellsInLibrarySize

      public boolean isIncludeMaskedCellsInLibrarySize()
      Include masked cells in the library size calculation.

      The default is to exclude them as if they were simply filtered out.

    • getFetchSize

      public int getFetchSize()

    • isUseCursorFetchIfSupported

      public boolean isUseCursorFetchIfSupported()

    • getConsole

      @Nullable public Console getConsole()