Package ubic.gemma.core.analysis.singleCell.aggregate

Class SingleCellAggregationConfig.SingleCellAggregationConfigBuilder

java.lang.Object

ubic.gemma.core.analysis.singleCell.aggregate.SingleCellAggregationConfig.SingleCellAggregationConfigBuilder

Enclosing class:

SingleCellAggregationConfig

public static class SingleCellAggregationConfig.SingleCellAggregationConfigBuilder
extends Object

Method Summary

Modifier and Type	Method	Description
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	adjustLibrarySizes(boolean adjustLibrarySizes)	Perform adjustment of library sizes to better reflect the number of reads in the source sample.
SingleCellAggregationConfig	build()
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	console(Console console)
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	fetchSize(int fetchSize)
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	includeMaskedCellsInLibrarySize(boolean includeMaskedCellsInLibrarySize)	Include masked cells in the library size calculation.
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	makePreferred(boolean makePreferred)	Make the resulting QT preferred.
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	mask(CellLevelCharacteristics mask)	Categorical mask to use on data.
String	toString()
SingleCellAggregationConfig.SingleCellAggregationConfigBuilder	useCursorFetchIfSupported(boolean useCursorFetchIfSupported)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details

mask

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder mask(@Nullable
 CellLevelCharacteristics mask)

Categorical mask to use on data.

The category of the characteristics must be Categories.MASK.

Returns:

this.

makePreferred

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder makePreferred(boolean makePreferred)

Make the resulting QT preferred.

Returns:

this.

adjustLibrarySizes

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder adjustLibrarySizes(boolean adjustLibrarySizes)

Perform adjustment of library sizes to better reflect the number of reads in the source sample.

Returns:

this.

includeMaskedCellsInLibrarySize

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder includeMaskedCellsInLibrarySize(boolean includeMaskedCellsInLibrarySize)

Include masked cells in the library size calculation.

The default is to exclude them as if they were simply filtered out.

Returns:

this.

fetchSize

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder fetchSize(int fetchSize)

Returns:

this.

useCursorFetchIfSupported

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder useCursorFetchIfSupported(boolean useCursorFetchIfSupported)

Returns:

this.

console

public SingleCellAggregationConfig.SingleCellAggregationConfigBuilder console(@Nullable
 Console console)

Returns:

this.

build

public SingleCellAggregationConfig build()

toString

public String toString()

Overrides:

toString in class Object