Class SingleCellBrainMatcher

java.lang.Object

ubic.gemma.core.geoscrape.SingleCellBrainMatcher

All Implemented Interfaces:

GeoRecordMatcher

@Component
public class SingleCellBrainMatcher
extends Object
implements GeoRecordMatcher

Brain + single-cell intersection matcher. Flags when:

1. the record's library strategy looks like RNA-seq (or the title/sample details indicate single-cell tech: 10x, Smart-seq2, Drop-seq); AND
2. BrainKeywordMatcher matches.

v2 will subsume this under the curation-agent pass; see GeoRecordMatcher.

Nested Class Summary

Nested classes/interfaces inherited from interface GeoRecordMatcher

GeoRecordMatcher.MatchResult

Constructor Summary

Constructors

Constructor	Description
SingleCellBrainMatcher(BrainKeywordMatcher brainMatcher)

Method Summary

Modifier and Type	Method	Description
GeoRecordMatcher.MatchResult	evaluate(GeoRecord r)	Decide whether this matcher flags the given record.
String	name()	Short, stable identifier — surfaces in REST request bodies (the criteria selector), the watermark's criteriaApplied column, and the preboarded's matchedCriteria JSON.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SingleCellBrainMatcher

@Autowired
public SingleCellBrainMatcher(BrainKeywordMatcher brainMatcher)

Method Details

name

public String name()

Description copied from interface: GeoRecordMatcher

Short, stable identifier — surfaces in REST request bodies (the criteria selector), the watermark's criteriaApplied column, and the preboarded's matchedCriteria JSON. Lowercase, no whitespace (e.g. "brain", "tfperturb").

Specified by:

name in interface GeoRecordMatcher

evaluate

public GeoRecordMatcher.MatchResult evaluate(GeoRecord r)

Description copied from interface: GeoRecordMatcher

Decide whether this matcher flags the given record.

Specified by:

evaluate in interface GeoRecordMatcher