Class GeoSourceMetadataBuilder.ExperimentIdentity

java.lang.Object

ubic.gemma.core.loader.expression.geo.GeoSourceMetadataBuilder.ExperimentIdentity

Enclosing class:

GeoSourceMetadataBuilder

public static class GeoSourceMetadataBuilder.ExperimentIdentity
extends Object

Identity of the experiment the document is being written for.

These cannot be read from the GeoSeries: experimentId does not exist until the experiment is persisted, and shortName is the only thing distinguishing split sub-series from one another — SplitExperimentServiceImpl puts the .1 in shortName alone and cloneAccession copies the GEO accession verbatim, so siblings share both accession and series text.

Author:

Gemma

Constructor Summary

Constructors

Constructor	Description
ExperimentIdentity(String shortName, Long experimentId, boolean splitSubseries, Set<String> sampleAccessions)

Method Summary

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ExperimentIdentity

public ExperimentIdentity(String shortName,
 @Nullable
 Long experimentId,
 boolean splitSubseries,
 @Nullable
 Set<String> sampleAccessions)

Parameters:

sampleAccessions - GSM accessions actually belonging to this experiment, or null for "all of the series". This MUST be supplied for a split sub-series: the parsed GeoSeries holds every sample in the GEO family, and siblings share both accession and series text, so serializing the series wholesale would give each sibling a sample list containing the other's samples.