Package ubic.gemma.core.loader.expression.geo.service

Class GeoRetrieveConfig

java.lang.Object
ubic.gemma.core.loader.expression.geo.service.GeoRetrieveConfig
public final class GeoRetrieveConfig extends Object
Configuration to use to retrieve GEO records from a GeoQuery.
Author:
poirigui

  • Field Details

    • DEFAULT

      public static GeoRetrieveConfig DEFAULT
      Default preset for retrieving GEO records.

    • DETAILED

      public static GeoRetrieveConfig DETAILED
      A preset configuration for retrieving detailed GEO records.

  • Method Details

    • builder

      public static GeoRetrieveConfig.GeoRetrieveConfigBuilder builder()

    • isMeshHeadings

      public boolean isMeshHeadings()
      Fill MeSH headings.

      This requires an additional query to PubMed.

    • isSubSeriesStatus

      public boolean isSubSeriesStatus()
      Fill sub-series status.

      This requires a detailed sample query.

    • isLibraryStrategy

      public boolean isLibraryStrategy()
      FIll library strategy.

    • isSampleDetails

      public boolean isSampleDetails()
      Fill sample details. This includes sample sources and characteristics.

      This requires a detailed sample query.

    • isIgnoreErrors

      public boolean isIgnoreErrors()
      Ignore errors when retrieving additional information.

      If set to true, any errors while retrieving additional information will be logged instead of thrown.

    • equals

      public boolean equals(Object o)
      Overrides:
      equals in class Object

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Object

    • toString

      public String toString()
      Overrides:
      toString in class Object