Class GeoMexSingleCellDataLoaderConfigurer
java.lang.Object
ubic.gemma.core.loader.expression.singleCell.AbstractMexSingleCellDataLoaderConfigurer
ubic.gemma.core.loader.expression.geo.singleCell.GeoMexSingleCellDataLoaderConfigurer
- All Implemented Interfaces:
DataLoaderConfigurer<MexSingleCellDataLoader,,SingleCellDataLoaderConfig> SingleCellDataLoaderConfigurer<MexSingleCellDataLoader>
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Constructor Summary
ConstructorsConstructorDescriptionGeoMexSingleCellDataLoaderConfigurer(Path mexDir, GeoSeries series, Path cellRangerPrefix) -
Method Summary
Modifier and TypeMethodDescriptionprotected booleanDetect if a MEX dataset is using the 10x Chromium Sequencing platform.protected Stringdetect10xChemistry(String sampleName, Path sampleDir) Detect the chemistry used by a 10x dataset.protected Stringdetect10xGenome(String sampleName, Path sampleDir) Detect the genome used by a 10x dataset.protected booleandetectUnfiltered(String sampleName, Path sampleDir) Detect if a MEX dataset is unfiltered.Methods inherited from class ubic.gemma.core.loader.expression.singleCell.AbstractMexSingleCellDataLoaderConfigurer
configureLoader
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Constructor Details
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GeoMexSingleCellDataLoaderConfigurer
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Method Details
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getSampleNames
- Specified by:
getSampleNamesin classAbstractMexSingleCellDataLoaderConfigurer
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getSampleDirs
- Specified by:
getSampleDirsin classAbstractMexSingleCellDataLoaderConfigurer
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detect10x
Description copied from class:AbstractMexSingleCellDataLoaderConfigurerDetect if a MEX dataset is using the 10x Chromium Sequencing platform.- Overrides:
detect10xin classAbstractMexSingleCellDataLoaderConfigurer
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detectUnfiltered
Description copied from class:AbstractMexSingleCellDataLoaderConfigurerDetect if a MEX dataset is unfiltered.- Overrides:
detectUnfilteredin classAbstractMexSingleCellDataLoaderConfigurer
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detect10xGenome
Description copied from class:AbstractMexSingleCellDataLoaderConfigurerDetect the genome used by a 10x dataset.- Specified by:
detect10xGenomein classAbstractMexSingleCellDataLoaderConfigurer
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detect10xChemistry
Description copied from class:AbstractMexSingleCellDataLoaderConfigurerDetect the chemistry used by a 10x dataset.- Specified by:
detect10xChemistryin classAbstractMexSingleCellDataLoaderConfigurer
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