Package ubic.gemma.core.loader.expression.sequencing

Class SequencingMetadata.SequencingMetadataBuilder

java.lang.Object

ubic.gemma.core.loader.expression.sequencing.SequencingMetadata.SequencingMetadataBuilder

Enclosing class:

SequencingMetadata

public static class SequencingMetadata.SequencingMetadataBuilder
extends Object

Method Summary

Modifier and Type	Method	Description
SequencingMetadata	build()
SequencingMetadata.SequencingMetadataBuilder	isPaired(Boolean isPaired)	Whether the reads are paired.
SequencingMetadata.SequencingMetadataBuilder	readCount(Long readCount)	The number of reads in the library.
SequencingMetadata.SequencingMetadataBuilder	readLength(Integer readLength)	The length of the reads.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Details

readLength

public SequencingMetadata.SequencingMetadataBuilder readLength(@Nullable
 Integer readLength)

The length of the reads.

If reads are paired, this is the sum of the length of each mate, not the fragment length.

This is null if unknown.

Returns:

this.

readCount

public SequencingMetadata.SequencingMetadataBuilder readCount(@Nullable
 Long readCount)

The number of reads in the library.

This is null if unknown.

Returns:

this.

isPaired

public SequencingMetadata.SequencingMetadataBuilder isPaired(@Nullable
 Boolean isPaired)

Whether the reads are paired.

This is null if unknown.

Returns:

this.

build

public SequencingMetadata build()

toString

public String toString()

Overrides:

toString in class Object