Uses of Interface
ubic.gemma.core.loader.genome.FastaCmd

Packages that use FastaCmd

Package	Description
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.genome

Uses of FastaCmd in ubic.gemma.core.loader.expression.arrayDesign

Methods in ubic.gemma.core.loader.expression.arrayDesign with parameters of type FastaCmd

Modifier and Type	Method	Description
Collection<BioSequence>	ArrayDesignSequenceProcessingService.processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceIdentifierFile, String[] databaseNames, Taxon taxon, boolean force, FastaCmd fc)
Collection<BioSequence>	ArrayDesignSequenceProcessingService.processArrayDesign(ArrayDesign arrayDesign, String[] databaseNames, boolean force, FastaCmd fc)	Provided primarily for testing.
Collection<BioSequence>	ArrayDesignSequenceProcessingServiceImpl.processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceIdentifierFile, String[] databaseNames, Taxon taxon, boolean force, FastaCmd fc)
Collection<BioSequence>	ArrayDesignSequenceProcessingServiceImpl.processArrayDesign(ArrayDesign arrayDesign, String[] databaseNames, boolean force, FastaCmd fc)

Uses of FastaCmd in ubic.gemma.core.loader.genome

Classes in ubic.gemma.core.loader.genome that implement FastaCmd

Modifier and Type	Class	Description
class	SimpleFastaCmd	Simple implementation of methods for fetching sequences from blast-formatted databases, using blastdbcmd (aka fastacmd)