Package ubic.gemma.core.loader.util.anndata

Class Layer

java.lang.Object

ubic.gemma.core.loader.util.anndata.Layer

public class Layer
extends Object

Represents a layer.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
Layer(H5File h5File, String path)

Method Summary

Modifier and Type	Method	Description
DenseMatrix	getDenseMatrix()	Obtain the dense matrix encoded in this layer.
String	getEncodingType()
Matrix	getMatrix()	Obtain the matrix encoded in this layer.
String	getPath()	Indicate where this layer is located relative to the H5 file.
SparseMatrix	getSparseMatrix()	Obtain the sparse matrix encoded in this layer.
String	getType()	Get the encoding type of this layer.
boolean	isDense()	Check if the matrix encoded in this layer is dense.
boolean	isSparse()	Check if the matrix encoded in this layer is sparse.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

Layer

public Layer(H5File h5File,
 String path)

Method Details

getEncodingType

public String getEncodingType()

getPath

public String getPath()

Indicate where this layer is located relative to the H5 file.

This is either X or layers/{layerName}.

getType

public String getType()

Get the encoding type of this layer.

Layers are either dense or sparse, use isSparse() or isDense() to verify that.

isSparse

public boolean isSparse()

Check if the matrix encoded in this layer is sparse.

isDense

public boolean isDense()

Check if the matrix encoded in this layer is dense.

getMatrix

public Matrix getMatrix()

Obtain the matrix encoded in this layer.

getSparseMatrix

public SparseMatrix getSparseMatrix()

Obtain the sparse matrix encoded in this layer.

getDenseMatrix

public DenseMatrix getDenseMatrix()

Obtain the dense matrix encoded in this layer.

toString

public String toString()

Overrides:

toString in class Object