EnsemblIdDesignElementMapper (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.core.loader.util.mapper.AbstractGeneIdentifierBasedDesignElementMapper<String>
- - ubic.gemma.core.loader.util.mapper.EnsemblIdDesignElementMapper

All Implemented Interfaces:

DesignElementMapper, EntityMapper<CompositeSequence>
```
public class EnsemblIdDesignElementMapper
extends AbstractGeneIdentifierBasedDesignElementMapper<String>
```
Match design elements using Ensembl IDs.

Author:

poirigui

See Also:

Gene.getEnsemblId()

Nested Class Summary
- Nested classes/interfaces inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper
  EntityMapper.MappingStatistics, EntityMapper.StatefulEntityMapper<T extends Identifiable>

Constructor Summary

Constructors
Constructor Description

EnsemblIdDesignElementMapper(Map<CompositeSequence,Set<Gene>> cs2g)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected String`	`getIdentifier(Gene gene)`	Extract an identifier from the gene.
`String`	`getName()`	Obtain the name of the mapping strategy.
`protected String`	`processIdentifier(String identifier)`	Extract an identifier from an externally supplied string.

Methods inherited from class ubic.gemma.core.loader.util.mapper.AbstractGeneIdentifierBasedDesignElementMapper
forCandidates, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.gemma.core.loader.util.mapper.DesignElementMapper
forCandidates

Methods inherited from interface ubic.gemma.core.loader.util.mapper.EntityMapper
contains, containsAny, getMappingStatistics, matchAll, matchAll, matchOne, matchOne

- Constructor Detail
  - EnsemblIdDesignElementMapper
```
public EnsemblIdDesignElementMapper(Map<CompositeSequence,Set<Gene>> cs2g)
```
- Method Detail
  - getName
```
public String getName()
```
    Description copied from interface: EntityMapper
    
    Obtain the name of the mapping strategy.
  - getIdentifier
```
protected String getIdentifier(Gene gene)
```
    Description copied from class: AbstractGeneIdentifierBasedDesignElementMapper
    
    Extract an identifier from the gene.
    
    Specified by:
    
    getIdentifier in class AbstractGeneIdentifierBasedDesignElementMapper<String>
  - processIdentifier
```
protected String processIdentifier(String identifier)
```
    Description copied from class: AbstractGeneIdentifierBasedDesignElementMapper
    
    Extract an identifier from an externally supplied string.
    This may return null if the identifier cannot be parsed.
    
    Specified by:
    
    processIdentifier in class AbstractGeneIdentifierBasedDesignElementMapper<String>