Class GeeqTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.expression.GeeqTaskCommand

All Implemented Interfaces:

Serializable

public class GeeqTaskCommand
extends TaskCommand

Async-task wrapper around GeeqService.calculateScore(ExpressionExperiment, GeeqService.ScoreMode).

Author:

paul

See Also:

• Serialized Form

Field Summary

Fields inherited from class TaskCommand

MAX_QUEUING_MILLIS, MAX_RUNTIME_MILLIS

Constructor Summary

Constructors

Constructor	Description
GeeqTaskCommand(ExpressionExperiment expressionExperiment, GeeqService.ScoreMode mode)

Method Summary

Modifier and Type	Method	Description
ExpressionExperiment	getExpressionExperiment()
GeeqService.ScoreMode	getMode()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()	Obtain the class of the Task object that will be run for this command.
void	setExpressionExperiment(ExpressionExperiment expressionExperiment)
void	setMode(GeeqService.ScoreMode mode)

Methods inherited from class TaskCommand

getMaxQueueMillis, getMaxRuntimeMillis, getPersistJobDetails, getSecurityContext, getSubmitter, isEmailAlert, setEmailAlert, setMaxQueueMillis, setMaxRuntimeMillis, setPersistJobDetails

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GeeqTaskCommand

public GeeqTaskCommand(ExpressionExperiment expressionExperiment,
 GeeqService.ScoreMode mode)

Method Details

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Description copied from class: TaskCommand

Obtain the class of the Task object that will be run for this command.

If null, the task command cannot be submitted through TaskRunningService.submitTaskCommand(TaskCommand) and a task object must be explicitly created.

For now, this how we map from TaskCommand to Task that actually runs it. We have to have this mapping somewhere until we make Tasks themselves serializable. Tasks are not readily serializable because they have dependencies to Spring services. at which point TaskCommand can be deprecated(or remain as TaskContext).

Overrides:

getTaskClass in class TaskCommand

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment()

getMode

public GeeqService.ScoreMode getMode()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

setMode

public void setMode(GeeqService.ScoreMode mode)