Package ubic.gemma.core.visualization.cellbrowser

Class CellBrowserMetadataWriter

java.lang.Object

ubic.gemma.core.visualization.cellbrowser.CellBrowserMetadataWriter

public class CellBrowserMetadataWriter
extends Object

Write metadata file for the Cell Browser visualization tool.

Author:

poirigui

Constructor Summary

Constructors

Constructor	Description
CellBrowserMetadataWriter()

Method Summary

Modifier and Type	Method	Description
void	write(ExpressionExperiment ee, SingleCellDimension singleCellDimension, Writer writer)
void	writeCell(BioAssay bioAssay, String cellId, int cellIndex, List<ExperimentalFactor> factors, Map<ExperimentalFactor,Map<BioMaterial,FactorValue>> factorValueMap, List<CellLevelCharacteristics> clcs, Writer writer)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CellBrowserMetadataWriter

public CellBrowserMetadataWriter()

Method Detail

write

public void write(ExpressionExperiment ee,
                  SingleCellDimension singleCellDimension,
                  Writer writer)
           throws IOException

Throws:

IOException

writeCell

public void writeCell(BioAssay bioAssay,
                      String cellId,
                      int cellIndex,
                      List<ExperimentalFactor> factors,
                      Map<ExperimentalFactor,Map<BioMaterial,FactorValue>> factorValueMap,
                      List<CellLevelCharacteristics> clcs,
                      Writer writer)
               throws IOException

Throws:

IOException