Package ubic.gemma.model.association.coexpression

Class Gene2GeneCoexpression

java.lang.Object
ubic.gemma.model.association.Gene2GeneIdAssociation
ubic.gemma.model.association.coexpression.Gene2GeneCoexpression
All Implemented Interfaces:
Comparable<Gene2GeneCoexpression>
Direct Known Subclasses:
HumanGeneCoExpression, MouseGeneCoExpression, OtherGeneCoExpression, RatGeneCoExpression
public abstract class Gene2GeneCoexpression extends Gene2GeneIdAssociation implements Comparable<Gene2GeneCoexpression>
Represents coexpression of a pair of genes.
Author:
Paul

  • Field Details

  • Constructor Details

    • Gene2GeneCoexpression

      public Gene2GeneCoexpression()

  • Method Details

    • compareTo

      public int compareTo(Gene2GeneCoexpression o)
      Specified by:
      compareTo in interface Comparable<Gene2GeneCoexpression>

    • getDataSetsSupporting

      public Collection<Long> getDataSetsSupporting()

    • getNumDatasetsSupporting

      public Integer getNumDatasetsSupporting()
      Returns:
      The value returned comes from the supportDetails if it is non-null

    • setNumDatasetsSupporting

      public void setNumDatasetsSupporting(Integer numDataSets)
      Warning: wouldn't normally use this. This is just to make serializing easier.
      Parameters:
      numDataSets - Only used if the supportDetails are null. Otherwise this just calls updateNumDatasetsSupporting().

    • getSupportDetails

      public SupportDetails getSupportDetails()

    • setSupportDetails

      public void setSupportDetails(SupportDetails supportDetails)

    • isPositiveCorrelation

      public Boolean isPositiveCorrelation()

    • isSupportedBy

      public boolean isSupportedBy(ExpressionExperiment ee)

    • hashCode

      public int hashCode()
      Overrides:
      hashCode in class Gene2GeneIdAssociation

    • equals

      public boolean equals(Object obj)
      Overrides:
      equals in class Gene2GeneIdAssociation

    • toString

      public String toString()
      Overrides:
      toString in class Gene2GeneIdAssociation

    • updateNumDatasetsSupporting

      public void updateNumDatasetsSupporting()
      Refresh the value of numDataSetsSupporting after updating supportDetails (use during modification of the data...)