Package ubic.gemma.model.association.coexpression

Class Gene2GeneCoexpression

java.lang.Object

ubic.gemma.model.association.Gene2GeneIdAssociation

ubic.gemma.model.association.coexpression.Gene2GeneCoexpression

All Implemented Interfaces:

Serializable, Comparable<Gene2GeneCoexpression>

Direct Known Subclasses:

HumanGeneCoExpression, MouseGeneCoExpression, OtherGeneCoExpression, RatGeneCoExpression

public abstract class Gene2GeneCoexpression
extends Gene2GeneIdAssociation
implements Comparable<Gene2GeneCoexpression>

Represents coexpression of a pair of genes.

Author:

Paul

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field	Description
SupportDetails	supportDetails

Constructor Summary

Constructors

Constructor	Description
Gene2GeneCoexpression()

Method Summary

Modifier and Type	Method	Description
int	compareTo(Gene2GeneCoexpression o)
boolean	equals(Object obj)
Collection<Long>	getDataSetsSupporting()
Integer	getNumDatasetsSupporting()
SupportDetails	getSupportDetails()
int	hashCode()
Boolean	isPositiveCorrelation()
boolean	isSupportedBy(BioAssaySet bioAssaySet)
void	setNumDatasetsSupporting(Integer numDataSets)	Warning: wouldn't normally use this.
void	setSupportDetails(SupportDetails supportDetails)
String	toString()
void	updateNumDatasetsSupporting()	Refresh the value of numDataSetsSupporting after updating supportDetails (use during modification of the data...)

Methods inherited from class ubic.gemma.model.association.Gene2GeneIdAssociation

getFirstGene, getId, getSecondGene

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

supportDetails

public SupportDetails supportDetails

Constructor Detail

Gene2GeneCoexpression

public Gene2GeneCoexpression()

Method Detail

compareTo

public int compareTo(Gene2GeneCoexpression o)

Specified by:

compareTo in interface Comparable<Gene2GeneCoexpression>

getDataSetsSupporting

public Collection<Long> getDataSetsSupporting()

getNumDatasetsSupporting

public Integer getNumDatasetsSupporting()

Returns:

The value returned comes from the supportDetails if it is non-null

setNumDatasetsSupporting

public void setNumDatasetsSupporting(Integer numDataSets)

Warning: wouldn't normally use this. This is just to make serializing easier.

Parameters:

numDataSets - Only used if the supportDetails are null. Otherwise this just calls updateNumDatasetsSupporting().

getSupportDetails

public SupportDetails getSupportDetails()

setSupportDetails

public void setSupportDetails(SupportDetails supportDetails)

isPositiveCorrelation

public Boolean isPositiveCorrelation()

isSupportedBy

public boolean isSupportedBy(BioAssaySet bioAssaySet)

hashCode

public int hashCode()

Overrides:

hashCode in class Gene2GeneIdAssociation

equals

public boolean equals(Object obj)

Overrides:

equals in class Gene2GeneIdAssociation

toString

public String toString()

Overrides:

toString in class Gene2GeneIdAssociation

updateNumDatasetsSupporting

public void updateNumDatasetsSupporting()

Refresh the value of numDataSetsSupporting after updating supportDetails (use during modification of the data...)