Uses of Class
ubic.gemma.model.common.auditAndSecurity.AuditEvent

Packages that use AuditEvent

Package	Description
ubic.gemma.core.security.audit
ubic.gemma.model.common.auditAndSecurity
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.model.common.auditAndSecurity.eventType
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.rest

Uses of AuditEvent in ubic.gemma.core.security.audit

Methods in ubic.gemma.core.security.audit that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	AuditedEvent.getAuditEvent()

Methods in ubic.gemma.core.security.audit with parameters of type AuditEvent

Modifier and Type	Method	Description
void	AuditLogger.log(Auditable auditable, AuditEvent event)	Log a given audit event.

Constructors in ubic.gemma.core.security.audit with parameters of type AuditEvent

Modifier	Constructor	Description
	AuditedEvent(Object source, Auditable target, AuditEventType eventType, AuditEventPayload payload, AuditEvent auditEvent)

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity

Subclasses with type arguments of type AuditEvent in ubic.gemma.model.common.auditAndSecurity

Modifier and Type	Class	Description
class	AuditEventValueObject

Methods in ubic.gemma.model.common.auditAndSecurity that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	AuditTrail.getLastEvent()
static AuditEvent	AuditEvent.Factory.newInstance(Date date, AuditAction action, String note, String detail, User performer, AuditEventType eventType)	Create a new, immutable audit event.
static AuditEvent	AuditEvent.Factory.newInstance(Date date, AuditAction action, String note, String detail, User performer, AuditEventType eventType, String payload)	Create a new audit event with a serialised payload.
static AuditEvent	AuditEvent.Factory.newInstance(Date date, AuditAction action, String note, String detail, User performer, AuditEventType eventType, String payload, String onBehalfOf)	As above, naming the curator the action was taken for.

Methods in ubic.gemma.model.common.auditAndSecurity that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
List<AuditEvent>	AuditTrail.getEvents()

Methods in ubic.gemma.model.common.auditAndSecurity with parameters of type AuditEvent

Modifier and Type	Method	Description
void	AuditTrail.addEvent(AuditEvent event)	Append a new AuditEvent to this trail AND repoint AuditTrail.lastEvent when the new event is more recent than the current pointer under (date desc, id desc) ordering.
void	AuditTrail.setLastEvent(AuditEvent lastEvent)

Method parameters in ubic.gemma.model.common.auditAndSecurity with type arguments of type AuditEvent

Modifier and Type	Method	Description
void	AuditTrail.setEvents(List<AuditEvent> events)

Constructors in ubic.gemma.model.common.auditAndSecurity with parameters of type AuditEvent

Modifier	Constructor	Description
	AuditEventValueObject(AuditEvent ae)

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity.curation

Methods in ubic.gemma.model.common.auditAndSecurity.curation that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	CurationDetails.getLastNeedsAttentionEvent()
AuditEvent	CurationDetails.getLastNoteUpdateEvent()
AuditEvent	CurationDetails.getLastTroubledEvent()
AuditEvent	AbstractCuratableValueObject.LastEventTriple.needsAttention()	Returns the value of the needsAttention record component.
AuditEvent	AbstractCuratableValueObject.LastEventTriple.noteUpdate()	Returns the value of the noteUpdate record component.
AuditEvent	AbstractCuratableValueObject.LastEventTriple.troubled()	Returns the value of the troubled record component.

Methods in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AuditEvent

Modifier and Type	Method	Description
void	CurationDetails.setLastNeedsAttentionEvent(AuditEvent lastNeedsAttentionEvent)
void	CurationDetails.setLastNoteUpdateEvent(AuditEvent lastNoteUpdateEvent)
void	CurationDetails.setLastTroubledEvent(AuditEvent lastTroubledEvent)

Constructors in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AuditEvent

Modifier	Constructor	Description
	LastEventTriple(AuditEvent troubled, AuditEvent needsAttention, AuditEvent noteUpdate)	Creates an instance of a LastEventTriple record class.

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity.eventType

Methods in ubic.gemma.model.common.auditAndSecurity.eventType with parameters of type AuditEvent

Modifier and Type	Method	Description
abstract void	CurationDetailsEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	Deprecated. This method should be overloaded in all of the extensions of this class to do the specific actions they wre designed for.
void	CurationNoteUpdateEvent.updateCurationDetails(CurationDetails curationDetails, AuditEvent auditEvent)	Deprecated.
void	DoesNotNeedAttentionEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	Deprecated.
void	NeedsAttentionEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	Deprecated.
void	NotTroubledStatusFlagEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	Deprecated.
final void	TroubledStatusFlagEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	Deprecated.

Uses of AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity

Subclasses with type arguments of type AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Class	Description
class	AuditEventDaoImpl

Subinterfaces with type arguments of type AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity

Modifier and Type	Interface	Description
interface	AuditEventDao

Methods in ubic.gemma.persistence.service.common.auditAndSecurity that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note)
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail)
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail, Date performedDate)	Add an update audit event of a specific type to the passed auditable entity.
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, Throwable throwable)	Add an update audit event with an exception.
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, String note)	Add an update event defined by the given parameters, to the given auditable.
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail, Date performedDate)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, Throwable throwable)	This is using the Propagation.REQUIRES_NEW so that if the throwable is raised, it will not roll back the audit trail event.
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, String note)
AuditEvent	AuditTrailService.addUpdateEventWithPayload(Auditable auditable, Class<? extends AuditEventType> type, String note, String payloadJson)	Add an update audit event of a specific type, attaching a JSON payload string.
AuditEvent	AuditTrailServiceImpl.addUpdateEventWithPayload(Auditable auditable, Class<? extends AuditEventType> type, String note, String payloadJson)
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable)	Obtain the latest event for a given auditable.
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)	Obtain the latest event of a given type for a given auditable.
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)	Obtain the latest event of a given type, excluding a certain number of types.
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable)
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)

Methods in ubic.gemma.persistence.service.common.auditAndSecurity that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
<T extends Auditable> Map<T, AuditEvent>	AuditEventDao.getCreateEvents(Collection<T> auditables)	Obtain the creation events for the given auditables.
<T extends Auditable> Map<T, AuditEvent>	AuditEventDaoImpl.getCreateEvents(Collection<T> auditables)
<T extends Auditable> Map<T, AuditEvent>	AuditEventService.getCreateEvents(Collection<T> auditable)
<T extends Auditable> Map<T, AuditEvent>	AuditEventServiceImpl.getCreateEvents(Collection<T> auditables)
List<AuditEvent>	AuditEventDao.getEvents(Auditable auditable)	Obtain the audit events associated to a given auditable.
List<AuditEvent>	AuditEventDaoImpl.getEvents(Auditable auditable)
List<AuditEvent>	AuditEventService.getEvents(Auditable auditable)
List<AuditEvent>	AuditEventServiceImpl.getEvents(Auditable auditable)
CursorPage<AuditEvent>	AuditEventDao.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)	Keyset-pagination counterpart to AuditEventDao.getEvents(Auditable) — cursor mode for GET /datasets/{dataset}/auditEvents (step 1q of CURSOR_PAGINATION_STEP1_PLAN.md).
CursorPage<AuditEvent>	AuditEventDaoImpl.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)
CursorPage<AuditEvent>	AuditEventService.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)	Keyset-pagination counterpart to AuditEventService.getEvents(Auditable) for the GET /datasets/{dataset}/auditEvents endpoint — see CURSOR_PAGINATION_STEP1_PLAN.md step 1q.
CursorPage<AuditEvent>	AuditEventServiceImpl.getEventsByCursor(Auditable auditable, Cursor cursor, int limit)
List<AuditEvent>	AuditEventDao.getEventsWithType(Auditable auditable)	Obtain all events with a non-null event type for a given auditable.
List<AuditEvent>	AuditEventDaoImpl.getEventsWithType(Auditable auditable)
List<AuditEvent>	AuditEventService.getEventsWithType(Auditable auditable)	Retrieve all events with an event type.
List<AuditEvent>	AuditEventServiceImpl.getEventsWithType(Auditable auditable)
<T extends Auditable> Map<T, AuditEvent>	AuditEventDao.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)	Obtain the latest events of a specified type for all auditable of a given type.
<T extends Auditable> Map<T, AuditEvent>	AuditEventDao.getLastEvents(Collection<T> auditables)	Obtain the latest event of any type for all given auditables — the batch counterpart of AuditEventDao.getLastEvent(Auditable).
<T extends Auditable> Map<T, AuditEvent>	AuditEventDao.getLastEvents(Collection<T> auditables, Class<? extends AuditEventType> type)	Obtain the latest events of a specified type for all given auditables.
<T extends Auditable> Map<T, AuditEvent>	AuditEventDaoImpl.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T, AuditEvent>	AuditEventDaoImpl.getLastEvents(Collection<T> auditables)
<T extends Auditable> Map<T, AuditEvent>	AuditEventDaoImpl.getLastEvents(Collection<T> auditables, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T, AuditEvent>	AuditEventService.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T, AuditEvent>	AuditEventService.getLastEvents(Collection<T> auditables)	Obtain the latest typed event for each of the given auditables, whatever its type.
<T extends Auditable> Map<Class<? extends AuditEventType>, Map<T, AuditEvent>>	AuditEventService.getLastEvents(Collection<T> auditables, Collection<Class<? extends AuditEventType>> types)	Fast method to retrieve auditEventTypes of multiple classes.
<T extends Auditable> Map<T, AuditEvent>	AuditEventServiceImpl.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T, AuditEvent>	AuditEventServiceImpl.getLastEvents(Collection<T> auditables)
<T extends Auditable> Map<Class<? extends AuditEventType>, Map<T, AuditEvent>>	AuditEventServiceImpl.getLastEvents(Collection<T> auditables, Collection<Class<? extends AuditEventType>> types)

Uses of AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type AuditEvent

Modifier and Type	Method	Description
protected void	AbstractCuratableDao.addEventsToMap(Map<Long, Collection<AuditEvent>> eventMap, Long id, AuditEvent event)
void	AbstractCuratableDao.updateCurationDetailsFromAuditEvent(C curatable, AuditEvent auditEvent)
void	CuratableDao.updateCurationDetailsFromAuditEvent(C curatable, AuditEvent auditEvent)	Update the curation details of a given curatable entity.
void	GenericCuratableDaoImpl.updateCurationDetailsFromAuditEvent(Curatable auditable, AuditEvent auditEvent)

Method parameters in ubic.gemma.persistence.service.common.auditAndSecurity.curation with type arguments of type AuditEvent

Modifier and Type	Method	Description
protected void	AbstractCuratableDao.addEventsToMap(Map<Long, Collection<AuditEvent>> eventMap, Long id, AuditEvent event)

Uses of AuditEvent in ubic.gemma.persistence.service.expression.arrayDesign

Methods in ubic.gemma.persistence.service.expression.arrayDesign that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
Map<Long, Collection<AuditEvent>>	ArrayDesignDao.getAuditEvents(Collection<Long> ids)
Map<Long, Collection<AuditEvent>>	ArrayDesignDaoImpl.getAuditEvents(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadService.getLastGeneMapping(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadServiceImpl.getLastGeneMapping(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignService.getLastGeneMapping(Collection<Long> ids)	Gets the AuditEvents of the latest gene mapping for the specified array design ids.
Map<Long, AuditEvent>	ArrayDesignServiceImpl.getLastGeneMapping(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadService.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadServiceImpl.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignService.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignServiceImpl.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadService.getLastSequenceAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadServiceImpl.getLastSequenceAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignService.getLastSequenceAnalysis(Collection<Long> ids)	Gets the AuditEvents of the latest sequence analyses for the specified array design ids.
Map<Long, AuditEvent>	ArrayDesignServiceImpl.getLastSequenceAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadService.getLastSequenceUpdate(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignReadServiceImpl.getLastSequenceUpdate(Collection<Long> ids)
Map<Long, AuditEvent>	ArrayDesignService.getLastSequenceUpdate(Collection<Long> ids)	Gets the AuditEvents of the latest sequence update for the specified array design ids.
Map<Long, AuditEvent>	ArrayDesignServiceImpl.getLastSequenceUpdate(Collection<Long> ids)

Uses of AuditEvent in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
Map<Long, Collection<AuditEvent>>	ExpressionExperimentDao.getAuditEvents(Collection<Long> ids)
Map<Long, Collection<AuditEvent>>	ExpressionExperimentDaoImpl.getAuditEvents(Collection<Long> ids)
List<AuditEvent>	WorkflowService.getHistory(Investigation investigation)	Retrieve the full chronological history of workflow transitions for a dataset, derived from the AUDIT_EVENT stream filtered to WorkflowStateChangedEvent rows.
List<AuditEvent>	WorkflowServiceImpl.getHistory(Investigation investigation)
Map<Long, AuditEvent>	ExpressionExperimentReadService.getLastLinkAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentReadServiceImpl.getLastLinkAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentService.getLastLinkAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentServiceImpl.getLastLinkAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentReadService.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentReadServiceImpl.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentService.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentServiceImpl.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentReadService.getLastProcessedDataUpdate(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentReadServiceImpl.getLastProcessedDataUpdate(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentService.getLastProcessedDataUpdate(Collection<Long> ids)
Map<Long, AuditEvent>	ExpressionExperimentServiceImpl.getLastProcessedDataUpdate(Collection<Long> ids)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentDao.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentDaoImpl.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentReadService.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentReadServiceImpl.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentService.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment, Collection<AuditEvent>>	ExpressionExperimentServiceImpl.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)

Uses of AuditEvent in ubic.gemma.rest

Methods in ubic.gemma.rest with parameters of type AuditEvent

Modifier and Type	Method	Description
static DatasetUpdateSummaryValueObject	DatasetUpdateSummaryValueObject.forCreation(AuditEvent event)	Build a summary from the dataset's creation row, for a dataset that has never received a typed event.
static DatasetUpdateSummaryValueObject	DatasetUpdateSummaryValueObject.forEvent(AuditEvent event)	Build a summary from the dataset's most recent typed audit event.