Uses of Class
ubic.gemma.model.common.auditAndSecurity.AuditEvent

Packages that use AuditEvent

Package	Description
ubic.gemma.core.security.audit
ubic.gemma.model.common.auditAndSecurity
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.model.common.auditAndSecurity.eventType
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.experiment

Uses of AuditEvent in ubic.gemma.core.security.audit

Methods in ubic.gemma.core.security.audit with parameters of type AuditEvent

Modifier and Type	Method	Description
void	AuditLogger.log(Auditable auditable, AuditEvent event)	Log a given audit event.

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity

Methods in ubic.gemma.model.common.auditAndSecurity that return AuditEvent

Modifier and Type	Method	Description
static AuditEvent	AuditEvent.Factory.newInstance(Date date, AuditAction action, String note, String detail, User performer, AuditEventType eventType)	Create a new, immutable audit event.

Methods in ubic.gemma.model.common.auditAndSecurity that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
List<AuditEvent>	AuditTrail.getEvents()

Method parameters in ubic.gemma.model.common.auditAndSecurity with type arguments of type AuditEvent

Modifier and Type	Method	Description
void	AuditTrail.setEvents(List<AuditEvent> events)

Constructors in ubic.gemma.model.common.auditAndSecurity with parameters of type AuditEvent

Modifier	Constructor	Description
	AuditEventValueObject(AuditEvent ae)

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity.curation

Methods in ubic.gemma.model.common.auditAndSecurity.curation that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	CurationDetails.getLastNeedsAttentionEvent()
AuditEvent	CurationDetails.getLastNoteUpdateEvent()
AuditEvent	CurationDetails.getLastTroubledEvent()

Methods in ubic.gemma.model.common.auditAndSecurity.curation with parameters of type AuditEvent

Modifier and Type	Method	Description
void	CurationDetails.setLastNeedsAttentionEvent(AuditEvent lastNeedsAttentionEvent)
void	CurationDetails.setLastNoteUpdateEvent(AuditEvent lastNoteUpdateEvent)
void	CurationDetails.setLastTroubledEvent(AuditEvent lastTroubledEvent)

Uses of AuditEvent in ubic.gemma.model.common.auditAndSecurity.eventType

Methods in ubic.gemma.model.common.auditAndSecurity.eventType with parameters of type AuditEvent

Modifier and Type	Method	Description
abstract void	CurationDetailsEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)	This method should be overloaded in all of the extensions of this class to do the specific actions they wre designed for.
void	CurationNoteUpdateEvent.updateCurationDetails(CurationDetails curationDetails, AuditEvent auditEvent)
void	DoesNotNeedAttentionEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)
void	NeedsAttentionEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)
void	NotTroubledStatusFlagEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)
final void	TroubledStatusFlagEvent.updateCurationDetails(CurationDetails curatable, AuditEvent auditEvent)

Uses of AuditEvent in ubic.gemma.model.expression.experiment

Method parameters in ubic.gemma.model.expression.experiment with type arguments of type AuditEvent

Modifier and Type	Method	Description
void	ExpressionExperimentDetailsValueObject.auditEvents2SampleRemovedFlags(Collection<AuditEvent> s)

Uses of AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity

Methods in ubic.gemma.persistence.service.common.auditAndSecurity that return AuditEvent

Modifier and Type	Method	Description
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note)
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail)
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail, Date performedDate)	Add an update audit event of a specific type to the passed auditable entity.
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, Throwable throwable)	Add an update audit event with an exception.
AuditEvent	AuditTrailService.addUpdateEvent(Auditable auditable, String note)	Add an update event defined by the given parameters, to the given auditable.
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, String detail, Date performedDate)
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, Class<? extends AuditEventType> type, String note, Throwable throwable)	This is using the Propagation.REQUIRES_NEW so that if the throwable is raised, it will not roll back the audit trail event.
AuditEvent	AuditTrailServiceImpl.addUpdateEvent(Auditable auditable, String note)
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable)	Obtain the latest event for a given auditable.
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)	Obtain the latest event of a given type for a given auditable.
AuditEvent	AuditEventDao.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)	Obtain the latest event of a given type, excluding a certain number of types.
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable)
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventDaoImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventService.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type)
AuditEvent	AuditEventServiceImpl.getLastEvent(Auditable auditable, Class<? extends AuditEventType> type, Collection<Class<? extends AuditEventType>> excludedTypes)

Methods in ubic.gemma.persistence.service.common.auditAndSecurity that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
<T extends Auditable> Map<T,AuditEvent>	AuditEventDao.getCreateEvents(Collection<T> auditables)	Obtain the creation events for the given auditables.
<T extends Auditable> Map<T,AuditEvent>	AuditEventDaoImpl.getCreateEvents(Collection<T> auditables)
<T extends Auditable> Map<T,AuditEvent>	AuditEventService.getCreateEvents(Collection<T> auditable)
<T extends Auditable> Map<T,AuditEvent>	AuditEventServiceImpl.getCreateEvents(Collection<T> auditables)
List<AuditEvent>	AuditEventDao.getEvents(Auditable auditable)	Obtain the audit events associated to a given auditable.
List<AuditEvent>	AuditEventDaoImpl.getEvents(Auditable auditable)
List<AuditEvent>	AuditEventService.getEvents(Auditable auditable)
List<AuditEvent>	AuditEventServiceImpl.getEvents(Auditable auditable)
<T extends Auditable> Map<T,AuditEvent>	AuditEventDao.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)	Obtain the latest events of a specified type for all auditable of a given type.
<T extends Auditable> Map<T,AuditEvent>	AuditEventDao.getLastEvents(Collection<T> auditables, Class<? extends AuditEventType> type)	Obtain the latest events of a specified type for all given auditables.
<T extends Auditable> Map<T,AuditEvent>	AuditEventDaoImpl.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T,AuditEvent>	AuditEventDaoImpl.getLastEvents(Collection<T> auditables, Class<? extends AuditEventType> type)
<T extends Auditable> Map<T,AuditEvent>	AuditEventService.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<Class<? extends AuditEventType>,Map<T,AuditEvent>>	AuditEventService.getLastEvents(Collection<T> auditables, Collection<Class<? extends AuditEventType>> types)	Fast method to retrieve auditEventTypes of multiple classes.
<T extends Auditable> Map<T,AuditEvent>	AuditEventServiceImpl.getLastEvents(Class<T> auditableClass, Class<? extends AuditEventType> type)
<T extends Auditable> Map<Class<? extends AuditEventType>,Map<T,AuditEvent>>	AuditEventServiceImpl.getLastEvents(Collection<T> auditables, Collection<Class<? extends AuditEventType>> types)

Uses of AuditEvent in ubic.gemma.persistence.service.common.auditAndSecurity.curation

Methods in ubic.gemma.persistence.service.common.auditAndSecurity.curation with parameters of type AuditEvent

Modifier and Type	Method	Description
protected void	AbstractCuratableDao.addEventsToMap(Map<Long,Collection<AuditEvent>> eventMap, Long id, AuditEvent event)
void	AbstractCuratableDao.updateCurationDetailsFromAuditEvent(C curatable, AuditEvent auditEvent)
void	CuratableDao.updateCurationDetailsFromAuditEvent(C curatable, AuditEvent auditEvent)	Update the curation details of a given curatable entity.
void	GenericCuratableDaoImpl.updateCurationDetailsFromAuditEvent(Curatable auditable, AuditEvent auditEvent)

Method parameters in ubic.gemma.persistence.service.common.auditAndSecurity.curation with type arguments of type AuditEvent

Modifier and Type	Method	Description
protected void	AbstractCuratableDao.addEventsToMap(Map<Long,Collection<AuditEvent>> eventMap, Long id, AuditEvent event)

Uses of AuditEvent in ubic.gemma.persistence.service.expression.arrayDesign

Methods in ubic.gemma.persistence.service.expression.arrayDesign that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
Map<Long,Collection<AuditEvent>>	ArrayDesignDao.getAuditEvents(Collection<Long> ids)
Map<Long,Collection<AuditEvent>>	ArrayDesignDaoImpl.getAuditEvents(Collection<Long> ids)
Map<Long,AuditEvent>	ArrayDesignService.getLastGeneMapping(Collection<Long> ids)	Gets the AuditEvents of the latest gene mapping for the specified array design ids.
Map<Long,AuditEvent>	ArrayDesignServiceImpl.getLastGeneMapping(Collection<Long> ids)
Map<Long,AuditEvent>	ArrayDesignService.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ArrayDesignServiceImpl.getLastRepeatAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ArrayDesignService.getLastSequenceAnalysis(Collection<Long> ids)	Gets the AuditEvents of the latest sequence analyses for the specified array design ids.
Map<Long,AuditEvent>	ArrayDesignServiceImpl.getLastSequenceAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ArrayDesignService.getLastSequenceUpdate(Collection<Long> ids)	Gets the AuditEvents of the latest sequence update for the specified array design ids.
Map<Long,AuditEvent>	ArrayDesignServiceImpl.getLastSequenceUpdate(Collection<Long> ids)

Uses of AuditEvent in ubic.gemma.persistence.service.expression.experiment

Methods in ubic.gemma.persistence.service.expression.experiment that return types with arguments of type AuditEvent

Modifier and Type	Method	Description
Map<Long,Collection<AuditEvent>>	ExpressionExperimentDao.getAuditEvents(Collection<Long> ids)
Map<Long,Collection<AuditEvent>>	ExpressionExperimentDaoImpl.getAuditEvents(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentService.getLastLinkAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentServiceImpl.getLastLinkAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentService.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentServiceImpl.getLastMissingValueAnalysis(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentService.getLastProcessedDataUpdate(Collection<Long> ids)
Map<Long,AuditEvent>	ExpressionExperimentServiceImpl.getLastProcessedDataUpdate(Collection<Long> ids)
Map<ExpressionExperiment,Collection<AuditEvent>>	ExpressionExperimentDao.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment,Collection<AuditEvent>>	ExpressionExperimentDaoImpl.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment,Collection<AuditEvent>>	ExpressionExperimentService.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)
Map<ExpressionExperiment,Collection<AuditEvent>>	ExpressionExperimentServiceImpl.getSampleRemovalEvents(Collection<ExpressionExperiment> expressionExperiments)