Package ubic.gemma.model.common.quantitationtype

Class QuantitationTypeValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<QuantitationType>

ubic.gemma.model.common.quantitationtype.QuantitationTypeValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class QuantitationTypeValueObject
extends IdentifiableValueObject<QuantitationType>

Value object for the QuantitationType.

If expressionExperimentId is set, then this QT is EE-associated, and can be distinguished from other QTs with the same ID used in different experiments as per Object.equals(Object) and Object.hashCode(). In this case, the vectorType is also known, but could be null.

Author:

thea

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.model.common.IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
QuantitationTypeValueObject()
QuantitationTypeValueObject(QuantitationType qt)
QuantitationTypeValueObject(QuantitationType qt, ExpressionExperiment expressionExperiment, Class<? extends DataVector> vectorType)	Create a QuantitationType VO in the context of an associated experiment.

Method Summary

Modifier and Type	Method	Description
boolean	getIsBackground()
boolean	getIsBackgroundSubtracted()
boolean	getIsBatchCorrected()
boolean	getIsMaskedPreferred()	Deprecated.
boolean	getIsNormalized()
boolean	getIsPreferred()
boolean	getIsRatio()
boolean	getIsRecomputedFromRawData()
void	setIsBackground(boolean isBackground)
void	setIsBackgroundSubtracted(boolean isBackgroundSubtracted)
void	setIsBatchCorrected(boolean isBatchCorrected)
void	setIsMaskedPreferred(boolean isMaskedPreferred)	Deprecated.
void	setIsNormalized(boolean isNormalized)
void	setIsPreferred(boolean isPreferred)
void	setIsRatio(boolean isRatio)
void	setIsRecomputedFromRawData(boolean isRecomputedFromRawData)

Methods inherited from class ubic.gemma.model.common.IdentifiableValueObject

getId, setId, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

QuantitationTypeValueObject

public QuantitationTypeValueObject()

QuantitationTypeValueObject

public QuantitationTypeValueObject(QuantitationType qt)

QuantitationTypeValueObject

public QuantitationTypeValueObject(QuantitationType qt,
                                   ExpressionExperiment expressionExperiment,
                                   @Nullable
                                   Class<? extends DataVector> vectorType)

Create a QuantitationType VO in the context of an associated experiment.

Note that an associated EE does not imply that the QT is used in processed/raw vectors. There are generic QTs to represent data transformation such as masking that require no storage of vectors.

Parameters:

expressionExperiment - associated experiment

vectorType - vector type if applicable, otherwise null

Method Detail

getIsBackground

public boolean getIsBackground()

setIsBackground

public void setIsBackground(boolean isBackground)

getIsBackgroundSubtracted

public boolean getIsBackgroundSubtracted()

setIsBackgroundSubtracted

public void setIsBackgroundSubtracted(boolean isBackgroundSubtracted)

getIsBatchCorrected

public boolean getIsBatchCorrected()

setIsBatchCorrected

public void setIsBatchCorrected(boolean isBatchCorrected)

getIsNormalized

public boolean getIsNormalized()

setIsNormalized

public void setIsNormalized(boolean isNormalized)

getIsRatio

public boolean getIsRatio()

setIsRatio

public void setIsRatio(boolean isRatio)

getIsRecomputedFromRawData

public boolean getIsRecomputedFromRawData()

setIsRecomputedFromRawData

public void setIsRecomputedFromRawData(boolean isRecomputedFromRawData)

getIsPreferred

public boolean getIsPreferred()

setIsPreferred

public void setIsPreferred(boolean isPreferred)

getIsMaskedPreferred

@Deprecated
public boolean getIsMaskedPreferred()

Deprecated.

setIsMaskedPreferred

@Deprecated
public void setIsMaskedPreferred(boolean isMaskedPreferred)

Deprecated.