Class ExperimentExpressionLevelsValueObject.VectorElementValueObject

java.lang.Object

ubic.gemma.model.expression.bioAssayData.ExperimentExpressionLevelsValueObject.VectorElementValueObject

All Implemented Interfaces:

Serializable

Enclosing class:

ExperimentExpressionLevelsValueObject

public static class ExperimentExpressionLevelsValueObject.VectorElementValueObject
extends Object
implements Serializable

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
VectorElementValueObject()
VectorElementValueObject(String designElementName, Map<String,Double> bioAssayValues)
VectorElementValueObject(DoubleVectorValueObject vector)

Method Summary

Modifier and Type	Method	Description
Map<String,Double>	getBioAssayExpressionLevels()
String	getDesignElementName()
Double	getRankByMax()
Double	getRankByMean()	Stored expression-level rank of this vector, by mean and by max, in [0, 1].

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

VectorElementValueObject

public VectorElementValueObject()

VectorElementValueObject

public VectorElementValueObject(DoubleVectorValueObject vector)

VectorElementValueObject

public VectorElementValueObject(String designElementName,
 Map<String,Double> bioAssayValues)

Method Details

getDesignElementName

public String getDesignElementName()

getBioAssayExpressionLevels

public Map<String,Double> getBioAssayExpressionLevels()

getRankByMean

@Nullable
public Double getRankByMean()

Stored expression-level rank of this vector, by mean and by max, in [0, 1].

🛑 Experiment-scoped: computed over the whole experiment when the vectors were processed, and reported unchanged however the request narrowed the samples. Use for "is this probe generally expressed in this study", not to order what was returned. null when the vector did not come from processed data, and on a sliced vector — DoubleVectorValueObject.slice drops the ranks rather than carry a number that no longer describes its data.

getRankByMax

@Nullable
public Double getRankByMax()