Package ubic.gemma.model.expression.experiment

Class DesignPreflightReport

java.lang.Object

ubic.gemma.model.expression.experiment.DesignPreflightReport

All Implemented Interfaces:

Serializable

public class DesignPreflightReport
extends Object
implements Serializable

Report returned by POST /datasets/{id}/designPreflight. Predicts what would happen if the accompanying proposed ExperimentalDesignValueObject were PUT to /datasets/{id}/design.

Contract:

• blockers non-empty ⇒ the corresponding PUT would return 4xx. Caller must fix the payload.
• blockers empty AND differentialExpressionAnalysesToDelete empty ⇒ PUT would succeed without ?force=true.
• blockers empty AND differentialExpressionAnalysesToDelete non-empty ⇒ PUT needs ?force=true (admin) to consent to the cascade.
• subsetsWithStaleAnchor is informational; never blocks, never forces.

Author:

ogan

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	DesignPreflightReport.AnalysisRef
static class	DesignPreflightReport.Blocker	One reason the proposed payload cannot be applied.
static class	DesignPreflightReport.EntityRef
static class	DesignPreflightReport.SubsetRef
static class	DesignPreflightReport.Summary

Constructor Summary

Constructors

Constructor	Description
DesignPreflightReport()

Method Summary

Modifier and Type	Method	Description
List<DesignPreflightReport.Blocker>	getBlockers()	Hard validation errors.
List<DesignPreflightReport.AnalysisRef>	getDifferentialExpressionAnalysesToDelete()
List<DesignPreflightReport.EntityRef>	getFactorsToDelete()
List<DesignPreflightReport.EntityRef>	getFactorValuesToDelete()
List<DesignPreflightReport.SubsetRef>	getSubsetsWithStaleAnchor()	Subsets whose definitional factor-value anchors would be deleted.
DesignPreflightReport.Summary	getSummary()
void	setBlockers(List<DesignPreflightReport.Blocker> blockers)	Hard validation errors.
void	setDifferentialExpressionAnalysesToDelete(List<DesignPreflightReport.AnalysisRef> differentialExpressionAnalysesToDelete)
void	setFactorsToDelete(List<DesignPreflightReport.EntityRef> factorsToDelete)
void	setFactorValuesToDelete(List<DesignPreflightReport.EntityRef> factorValuesToDelete)
void	setSubsetsWithStaleAnchor(List<DesignPreflightReport.SubsetRef> subsetsWithStaleAnchor)	Subsets whose definitional factor-value anchors would be deleted.
void	setSummary(DesignPreflightReport.Summary summary)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DesignPreflightReport

public DesignPreflightReport()

Method Details

getBlockers

public List<DesignPreflightReport.Blocker> getBlockers()

Hard validation errors. A non-empty list means the PUT would be rejected; fix the payload and re-run.

getSummary

public DesignPreflightReport.Summary getSummary()

getFactorsToDelete

public List<DesignPreflightReport.EntityRef> getFactorsToDelete()

getFactorValuesToDelete

public List<DesignPreflightReport.EntityRef> getFactorValuesToDelete()

getDifferentialExpressionAnalysesToDelete

public List<DesignPreflightReport.AnalysisRef> getDifferentialExpressionAnalysesToDelete()

getSubsetsWithStaleAnchor

public List<DesignPreflightReport.SubsetRef> getSubsetsWithStaleAnchor()

Subsets whose definitional factor-value anchors would be deleted. These are not blockers (subsets carry no FK to FactorValue), but their semantics drift after the change.

setBlockers

public void setBlockers(List<DesignPreflightReport.Blocker> blockers)

Hard validation errors. A non-empty list means the PUT would be rejected; fix the payload and re-run.

setSummary

public void setSummary(DesignPreflightReport.Summary summary)

setFactorsToDelete

public void setFactorsToDelete(List<DesignPreflightReport.EntityRef> factorsToDelete)

setFactorValuesToDelete

public void setFactorValuesToDelete(List<DesignPreflightReport.EntityRef> factorValuesToDelete)

setDifferentialExpressionAnalysesToDelete

public void setDifferentialExpressionAnalysesToDelete(List<DesignPreflightReport.AnalysisRef> differentialExpressionAnalysesToDelete)

setSubsetsWithStaleAnchor

public void setSubsetsWithStaleAnchor(List<DesignPreflightReport.SubsetRef> subsetsWithStaleAnchor)

Subsets whose definitional factor-value anchors would be deleted. These are not blockers (subsets carry no FK to FactorValue), but their semantics drift after the change.