Package ubic.gemma.model.genome.biosequence

Enum SequenceType

java.lang.Object
java.lang.Enum<SequenceType>
ubic.gemma.model.genome.biosequence.SequenceType
All Implemented Interfaces:
Serializable, Comparable<SequenceType>
public enum SequenceType extends Enum<SequenceType>

  • Enum Constant Details

    • AFFY_TARGET

      public static final SequenceType AFFY_TARGET
      Represents the target sequence provided by the manufacturer.

    • AFFY_PROBE

      public static final SequenceType AFFY_PROBE
      Represents a single probe sequence for Affymetrix reporters

    • EST

      public static final SequenceType EST

    • mRNA

      public static final SequenceType mRNA

    • REFSEQ

      public static final SequenceType REFSEQ

    • BAC

      public static final SequenceType BAC

    • WHOLE_GENOME

      public static final SequenceType WHOLE_GENOME

    • WHOLE_CHROMOSOME

      public static final SequenceType WHOLE_CHROMOSOME

    • DNA

      public static final SequenceType DNA
      Generic DNA sequence of any other type not representable by another value

    • OTHER

      public static final SequenceType OTHER

    • ORF

      public static final SequenceType ORF

    • AFFY_COLLAPSED

      public static final SequenceType AFFY_COLLAPSED
      Represents Affymetrix probe sequences that have been "collapsed" or combined into a single sequence.

    • OLIGO

      public static final SequenceType OLIGO
      Represents a (synthetic) oligonucleotide.

    • DUMMY

      public static final SequenceType DUMMY
      A placeholder element used for annotation associations for RNA-seq

  • Method Details

    • values

      public static SequenceType[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.
      Returns:
      an array containing the constants of this enum type, in the order they are declared

    • valueOf

      public static SequenceType valueOf(String name)
      Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
      Parameters:
      name - the name of the enum constant to be returned.
      Returns:
      the enum constant with the specified name
      Throws:
      IllegalArgumentException - if this enum type has no constant with the specified name
      NullPointerException - if the argument is null