Enum SequenceType

    • Enum Constant Detail

      • AFFY_TARGET

        public static final SequenceType AFFY_TARGET
        Represents the target sequence provided by the manufacturer.
      • AFFY_PROBE

        public static final SequenceType AFFY_PROBE
        Represents a single probe sequence for Affymetrix reporters
      • WHOLE_GENOME

        public static final SequenceType WHOLE_GENOME
      • WHOLE_CHROMOSOME

        public static final SequenceType WHOLE_CHROMOSOME
      • DNA

        public static final SequenceType DNA
        Generic DNA sequence of any other type not representable by another value
      • AFFY_COLLAPSED

        public static final SequenceType AFFY_COLLAPSED
        Represents Affymetrix probe sequences that have been "collapsed" or combined into a single sequence.
      • OLIGO

        public static final SequenceType OLIGO
        Represents a (synthetic) oligonucleotide.
      • DUMMY

        public static final SequenceType DUMMY
        A placeholder element used for annotation associations for RNA-seq
    • Method Detail

      • values

        public static SequenceType[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (SequenceType c : SequenceType.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static SequenceType valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null