Enum SequenceType
- java.lang.Object
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- java.lang.Enum<SequenceType>
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- ubic.gemma.model.genome.biosequence.SequenceType
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- All Implemented Interfaces:
Serializable
,Comparable<SequenceType>
public enum SequenceType extends Enum<SequenceType>
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Enum Constant Summary
Enum Constants Enum Constant Description AFFY_COLLAPSED
Represents Affymetrix probe sequences that have been "collapsed" or combined into a single sequence.AFFY_PROBE
Represents a single probe sequence for Affymetrix reportersAFFY_TARGET
Represents the target sequence provided by the manufacturer.BAC
DNA
Generic DNA sequence of any other type not representable by another valueDUMMY
A placeholder element used for annotation associations for RNA-seqEST
mRNA
OLIGO
Represents a (synthetic) oligonucleotide.ORF
OTHER
REFSEQ
WHOLE_CHROMOSOME
WHOLE_GENOME
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static SequenceType
valueOf(String name)
Returns the enum constant of this type with the specified name.static SequenceType[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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AFFY_TARGET
public static final SequenceType AFFY_TARGET
Represents the target sequence provided by the manufacturer.
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AFFY_PROBE
public static final SequenceType AFFY_PROBE
Represents a single probe sequence for Affymetrix reporters
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EST
public static final SequenceType EST
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mRNA
public static final SequenceType mRNA
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REFSEQ
public static final SequenceType REFSEQ
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BAC
public static final SequenceType BAC
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WHOLE_GENOME
public static final SequenceType WHOLE_GENOME
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WHOLE_CHROMOSOME
public static final SequenceType WHOLE_CHROMOSOME
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DNA
public static final SequenceType DNA
Generic DNA sequence of any other type not representable by another value
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OTHER
public static final SequenceType OTHER
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ORF
public static final SequenceType ORF
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AFFY_COLLAPSED
public static final SequenceType AFFY_COLLAPSED
Represents Affymetrix probe sequences that have been "collapsed" or combined into a single sequence.
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OLIGO
public static final SequenceType OLIGO
Represents a (synthetic) oligonucleotide.
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DUMMY
public static final SequenceType DUMMY
A placeholder element used for annotation associations for RNA-seq
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Method Detail
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values
public static SequenceType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (SequenceType c : SequenceType.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static SequenceType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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