Uses of Class
ubic.gemma.model.genome.biosequence.SequenceType
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Packages that use SequenceType Package Description ubic.gemma.core.loader.expression.arrayDesign ubic.gemma.model.genome.biosequence ubic.gemma.model.genome.sequenceAnalysis -
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Uses of SequenceType in ubic.gemma.core.loader.expression.arrayDesign
Methods in ubic.gemma.core.loader.expression.arrayDesign with parameters of type SequenceType Modifier and Type Method Description Collection<BioSequence>
ArrayDesignSequenceProcessingService. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, InputStream sequenceIdentifierFile, SequenceType sequenceType, Taxon taxon)
Read from FASTA file when the sequence file lacks any way to link the sequences back to the probes.Collection<BioSequence>
ArrayDesignSequenceProcessingService. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, SequenceType sequenceType)
The sequence file must provide an unambiguous way to associate the sequences with design elements on the array.Collection<BioSequence>
ArrayDesignSequenceProcessingService. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, SequenceType sequenceType, Taxon taxon)
The sequence file must provide an unambiguous way to associate the sequences with design elements on the array.Collection<BioSequence>
ArrayDesignSequenceProcessingServiceImpl. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, InputStream sequenceIdentifierFile, SequenceType sequenceType, Taxon taxon)
Collection<BioSequence>
ArrayDesignSequenceProcessingServiceImpl. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, SequenceType sequenceType)
Collection<BioSequence>
ArrayDesignSequenceProcessingServiceImpl. processArrayDesign(ArrayDesign arrayDesign, InputStream sequenceFile, SequenceType sequenceType, Taxon taxon)
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Uses of SequenceType in ubic.gemma.model.genome.biosequence
Methods in ubic.gemma.model.genome.biosequence that return SequenceType Modifier and Type Method Description SequenceType
BioSequence. getType()
static SequenceType
SequenceType. valueOf(String name)
Returns the enum constant of this type with the specified name.static SequenceType[]
SequenceType. values()
Returns an array containing the constants of this enum type, in the order they are declared.Methods in ubic.gemma.model.genome.biosequence with parameters of type SequenceType Modifier and Type Method Description void
BioSequence. setType(SequenceType type)
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Uses of SequenceType in ubic.gemma.model.genome.sequenceAnalysis
Constructors in ubic.gemma.model.genome.sequenceAnalysis with parameters of type SequenceType Constructor Description SequenceTypeValueObject(SequenceType sequenceType)
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