Uses of Class
ubic.gemma.model.genome.sequenceAnalysis.ThreePrimeDistanceMethod
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Packages that use ThreePrimeDistanceMethod Package Description ubic.gemma.core.goldenpath ubic.gemma.model.association ubic.gemma.model.genome.sequenceAnalysis -
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Uses of ThreePrimeDistanceMethod in ubic.gemma.core.goldenpath
Methods in ubic.gemma.core.goldenpath with parameters of type ThreePrimeDistanceMethod Modifier and Type Method Description Collection<BlatAssociation>GoldenPathSequenceAnalysis. findAssociations(String chromosome, Long queryStart, Long queryEnd, String starts, String sizes, String strand, ThreePrimeDistanceMethod method, ProbeMapperConfig config)Given a physical location, identify overlapping genes or predicted genes.Collection<BioSequence2GeneProduct>GoldenPathSequenceAnalysis. getThreePrimeDistances(String identifier, ThreePrimeDistanceMethod method)Uses default mapping settingsCollection<? extends BioSequence2GeneProduct>GoldenPathSequenceAnalysis. getThreePrimeDistances(BlatResult br, ThreePrimeDistanceMethod method)Given a physical location, find how close it is to the 3' end of a gene it is in, using default mapping settings. -
Uses of ThreePrimeDistanceMethod in ubic.gemma.model.association
Methods in ubic.gemma.model.association that return ThreePrimeDistanceMethod Modifier and Type Method Description ThreePrimeDistanceMethodBioSequence2GeneProduct. getThreePrimeDistanceMeasurementMethod()Methods in ubic.gemma.model.association with parameters of type ThreePrimeDistanceMethod Modifier and Type Method Description voidBioSequence2GeneProduct. setThreePrimeDistanceMeasurementMethod(ThreePrimeDistanceMethod threePrimeDistanceMeasurementMethod) -
Uses of ThreePrimeDistanceMethod in ubic.gemma.model.genome.sequenceAnalysis
Methods in ubic.gemma.model.genome.sequenceAnalysis that return ThreePrimeDistanceMethod Modifier and Type Method Description static ThreePrimeDistanceMethodThreePrimeDistanceMethod. valueOf(String name)Returns the enum constant of this type with the specified name.static ThreePrimeDistanceMethod[]ThreePrimeDistanceMethod. values()Returns an array containing the constants of this enum type, in the order they are declared.
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