Uses of Enum
ubic.gemma.model.genome.sequenceAnalysis.ThreePrimeDistanceMethod

Packages that use ThreePrimeDistanceMethod

Package	Description
ubic.gemma.core.goldenpath
ubic.gemma.model.association
ubic.gemma.model.genome.sequenceAnalysis

Uses of ThreePrimeDistanceMethod in ubic.gemma.core.goldenpath

Methods in ubic.gemma.core.goldenpath with parameters of type ThreePrimeDistanceMethod

Modifier and Type	Method	Description
Collection<BlatAssociation>	GoldenPathSequenceAnalysis.findAssociations(String chromosome, Long queryStart, Long queryEnd, String starts, String sizes, String strand, ThreePrimeDistanceMethod method, ProbeMapperConfig config)	Given a physical location, identify overlapping genes or predicted genes.
Collection<BioSequence2GeneProduct>	GoldenPathSequenceAnalysis.getThreePrimeDistances(String identifier, ThreePrimeDistanceMethod method)	Uses default mapping settings
Collection<? extends BioSequence2GeneProduct>	GoldenPathSequenceAnalysis.getThreePrimeDistances(BlatResult br, ThreePrimeDistanceMethod method)	Given a physical location, find how close it is to the 3' end of a gene it is in, using default mapping settings.

Uses of ThreePrimeDistanceMethod in ubic.gemma.model.association

Methods in ubic.gemma.model.association that return ThreePrimeDistanceMethod

Modifier and Type	Method	Description
ThreePrimeDistanceMethod	BioSequence2GeneProduct.getThreePrimeDistanceMeasurementMethod()

Methods in ubic.gemma.model.association with parameters of type ThreePrimeDistanceMethod

Modifier and Type	Method	Description
void	BioSequence2GeneProduct.setThreePrimeDistanceMeasurementMethod(ThreePrimeDistanceMethod threePrimeDistanceMeasurementMethod)

Uses of ThreePrimeDistanceMethod in ubic.gemma.model.genome.sequenceAnalysis

Methods in ubic.gemma.model.genome.sequenceAnalysis that return ThreePrimeDistanceMethod

Modifier and Type	Method	Description
static ThreePrimeDistanceMethod	ThreePrimeDistanceMethod.valueOf(String name)	Returns the enum constant of this type with the specified name.
static ThreePrimeDistanceMethod[]	ThreePrimeDistanceMethod.values()	Returns an array containing the constants of this enum type, in the order they are declared.