Package ubic.gemma.persistence.service.analysis.expression.coexpression

Interface CoexpressionAnalysisDao

All Superinterfaces:

AnalysisDao<CoexpressionAnalysis>, BaseDao<CoexpressionAnalysis>

All Known Implementing Classes:

CoexpressionAnalysisDaoImpl

public interface CoexpressionAnalysisDao
extends AnalysisDao<CoexpressionAnalysis>

See Also:

• CoexpressionAnalysis

Method Summary

Modifier and Type	Method	Description
Collection<CoexpressionAnalysis>	findByExperimentAnalyzed(ExpressionExperiment experimentAnalyzed)
Map<ExpressionExperiment,Collection<CoexpressionAnalysis>>	findByExperimentsAnalyzed(Collection<ExpressionExperiment> experimentsAnalyzed)
Collection<CoexpressionAnalysis>	findByTaxon(Taxon taxon)
CoexpCorrelationDistribution	getCoexpCorrelationDistribution(ExpressionExperiment experimentAnalyzed)
Collection<Long>	getExperimentsWithAnalysis(Collection<Long> idsToFilter)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Method Details

findByExperimentAnalyzed

Collection<CoexpressionAnalysis> findByExperimentAnalyzed(ExpressionExperiment experimentAnalyzed)

findByExperimentsAnalyzed

Map<ExpressionExperiment,Collection<CoexpressionAnalysis>> findByExperimentsAnalyzed(Collection<ExpressionExperiment> experimentsAnalyzed)

findByTaxon

Collection<CoexpressionAnalysis> findByTaxon(Taxon taxon)

getCoexpCorrelationDistribution

CoexpCorrelationDistribution getCoexpCorrelationDistribution(ExpressionExperiment experimentAnalyzed)

getExperimentsWithAnalysis

Collection<Long> getExperimentsWithAnalysis(Collection<Long> idsToFilter)