Package ubic.gemma.persistence.service.analysis.expression.coexpression

Class CoexpressionAnalysisDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<CoexpressionAnalysis>

ubic.gemma.persistence.service.analysis.expression.coexpression.CoexpressionAnalysisDaoImpl

All Implemented Interfaces:

AnalysisDao<CoexpressionAnalysis>, CoexpressionAnalysisDao, BaseDao<CoexpressionAnalysis>

@Repository
public class CoexpressionAnalysisDaoImpl
extends AbstractDao<CoexpressionAnalysis>
implements CoexpressionAnalysisDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.analysis.expression.coexpression.CoexpressionAnalysis.

See Also:

• CoexpressionAnalysis

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
Collection<CoexpressionAnalysis>	findByExperimentAnalyzed(ExpressionExperiment experimentAnalyzed)
Map<ExpressionExperiment,Collection<CoexpressionAnalysis>>	findByExperimentsAnalyzed(Collection<ExpressionExperiment> experimentsAnalyzed)
Collection<CoexpressionAnalysis>	findByTaxon(Taxon taxon)
CoexpCorrelationDistribution	getCoexpCorrelationDistribution(ExpressionExperiment experimentAnalyzed)
Collection<Long>	getExperimentsWithAnalysis(Collection<Long> eeIds)

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Constructor Details

CoexpressionAnalysisDaoImpl

@Autowired
public CoexpressionAnalysisDaoImpl(SessionFactory sessionFactory)

Method Details

findByExperimentAnalyzed

public Collection<CoexpressionAnalysis> findByExperimentAnalyzed(ExpressionExperiment experimentAnalyzed)

Specified by:

findByExperimentAnalyzed in interface CoexpressionAnalysisDao

findByExperimentsAnalyzed

public Map<ExpressionExperiment,Collection<CoexpressionAnalysis>> findByExperimentsAnalyzed(Collection<ExpressionExperiment> experimentsAnalyzed)

Specified by:

findByExperimentsAnalyzed in interface CoexpressionAnalysisDao

findByTaxon

public Collection<CoexpressionAnalysis> findByTaxon(Taxon taxon)

Specified by:

findByTaxon in interface CoexpressionAnalysisDao

getCoexpCorrelationDistribution

public CoexpCorrelationDistribution getCoexpCorrelationDistribution(ExpressionExperiment experimentAnalyzed)

Specified by:

getCoexpCorrelationDistribution in interface CoexpressionAnalysisDao

getExperimentsWithAnalysis

public Collection<Long> getExperimentsWithAnalysis(Collection<Long> eeIds)

Specified by:

getExperimentsWithAnalysis in interface CoexpressionAnalysisDao