Package ubic.gemma.persistence.service.association.coexpression

Class LinkCreator

java.lang.Object

ubic.gemma.persistence.service.association.coexpression.LinkCreator

public class LinkCreator
extends Object

Helper class to use for generating the link objects for persistence.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
LinkCreator(Taxon taxon)

Method Summary

Modifier and Type	Method	Description
Gene2GeneCoexpression	create(double w, Long firstGene, Long secondGene)
ExperimentCoexpressionLink	createEELink(ExpressionExperiment ee, Long linkid, Long firstGene, Long secondGene)
SupportDetails	createSupportDetails(Long g1, Long g2, boolean isPositive)
SupportDetails	createSupportDetails(Gene g1, Gene g2, Boolean isPositive)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

LinkCreator

public LinkCreator(Taxon taxon)

Method Details

create

public Gene2GeneCoexpression create(double w,
 Long firstGene,
 Long secondGene)

createEELink

public ExperimentCoexpressionLink createEELink(ExpressionExperiment ee,
 Long linkid,
 Long firstGene,
 Long secondGene)

createSupportDetails

public SupportDetails createSupportDetails(Gene g1,
 Gene g2,
 Boolean isPositive)

createSupportDetails

public SupportDetails createSupportDetails(Long g1,
 Long g2,
 boolean isPositive)