@ParametersAreNonnullByDefault
Package ubic.gemma.persistence.service.association.coexpression
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Interface Summary Interface Description CoexpressionCache Cache for coexpression results.CoexpressionDao CoexpressionNodeDegreeDao CoexpressionService A key service for working with coexpression at a fairly low level.GeneTestedInCache Cache of the 'tested-in' information for genes. -
Class Summary Class Description CoexpressionCacheImpl Configures the cache for gene2gene coexpression.CoexpressionCacheValueObject Used to cache results; these objects are unmodifiable, and contains the coexpression data for one query gene and one result gene, in all experiments.CoexpressionDaoImpl Manages and queries coexpression 'links' between genes.CoexpressionNodeDegreeDaoImpl CoexpressionServiceImpl CoexpressionValueObject Lightweight/convenient object for manipulating coexpression for a pair of genes.GeneTestedInCacheImpl LinkCreator Helper class to use for generating the link objects for persistence.NonPersistentNonOrderedCoexpLink Wrapper object used to track and eliminate duplicates.