Package ubic.gemma.persistence.service.association.coexpression

Class NonPersistentNonOrderedCoexpLink

java.lang.Object

ubic.gemma.persistence.service.association.coexpression.NonPersistentNonOrderedCoexpLink

All Implemented Interfaces:

Comparable<NonPersistentNonOrderedCoexpLink>

public class NonPersistentNonOrderedCoexpLink
extends Object
implements Comparable<NonPersistentNonOrderedCoexpLink>

Wrapper object used to track and eliminate duplicates. Crucial: for the purposes of "equals" and "hashcode", ignores the ID of the link, and the gene order. Sign is used. Sort order is by ID of the first gene only.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
NonPersistentNonOrderedCoexpLink(Long g1, Long g2, boolean b)
NonPersistentNonOrderedCoexpLink(Gene2GeneCoexpression link)
NonPersistentNonOrderedCoexpLink(Gene g1, Gene g2, boolean b)

Method Summary

Modifier and Type	Method	Description
int	compareTo(NonPersistentNonOrderedCoexpLink o)
boolean	equals(Object obj)
Long	getFirstGene()
Gene2GeneCoexpression	getLink()
Long	getSecondGene()
int	hashCode()
boolean	isPositiveCorrelation()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Gene g1,
 Gene g2,
 boolean b)

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Long g1,
 Long g2,
 boolean b)

NonPersistentNonOrderedCoexpLink

public NonPersistentNonOrderedCoexpLink(Gene2GeneCoexpression link)

Method Details

compareTo

public int compareTo(NonPersistentNonOrderedCoexpLink o)

Specified by:

compareTo in interface Comparable<NonPersistentNonOrderedCoexpLink>

getFirstGene

public Long getFirstGene()

Returns:

The first gene for the underlying link; this is always the lower ID.

getLink

public Gene2GeneCoexpression getLink()

Returns:

The underlying link (may be null depending on how this was constructed)

getSecondGene

public Long getSecondGene()

Returns:

The second gene for the underlying link; this is always the higher ID - not necesssarily the secondGene

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object obj)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object

isPositiveCorrelation

public boolean isPositiveCorrelation()