List<CoexpressionValueObject> |
CoexpressionDao.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int maxResults,
boolean quick) |
Find coexpression links for a gene that are common to all the given datasets.
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDao.findCoexpressionRelationships(Taxon taxon,
Collection<Long> genes,
Collection<Long> bas,
int maxResults,
boolean quick) |
Find coexpression links for the genes that are common to all the given datasets, so stringency = bas.size().
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDao.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
|
List<CoexpressionValueObject> |
CoexpressionDaoImpl.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int maxResults,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDaoImpl.findCoexpressionRelationships(Taxon taxon,
Collection<Long> genes,
Collection<Long> bas,
int maxResults,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDaoImpl.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
|
List<CoexpressionValueObject> |
CoexpressionService.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int maxResults,
boolean quick) |
Find links which are common to all of the given data sets.
|
List<CoexpressionValueObject> |
CoexpressionService.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
Search for coexpression across all available data sets, for the given genes considered individually, subject to a
stringency constraint.
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionService.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int maxResults,
boolean quick) |
Find coexpression links for the genes that are common to all the given datasets (that is, the stringency is equal
to the size of the set of datasets)
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionService.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
Find coexpression links for the genes that are common to at least stringency of the given datasets.
|
List<CoexpressionValueObject> |
CoexpressionServiceImpl.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int maxResults,
boolean quick) |
|
List<CoexpressionValueObject> |
CoexpressionServiceImpl.findCoexpressionRelationships(Gene gene,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionServiceImpl.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int maxResults,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionServiceImpl.findCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
int maxResults,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDao.findInterCoexpressionRelationships(Taxon taxon,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
boolean quick) |
Return coexpression relationships among the given genes, limited to the given data sets.
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionDaoImpl.findInterCoexpressionRelationships(Taxon taxon,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
boolean quick) |
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionService.findInterCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
boolean quick) |
Return coexpression relationships among the given genes in the given data sets, in a map of query gene to
coexpression objects.
|
Map<Long,List<CoexpressionValueObject>> |
CoexpressionServiceImpl.findInterCoexpressionRelationships(Taxon t,
Collection<Long> genes,
Collection<Long> bas,
int stringency,
boolean quick) |
|
List<CoexpressionValueObject> |
CoexpressionCache.get(Long g) |
|
List<CoexpressionValueObject> |
CoexpressionCacheImpl.get(Long geneId) |
|
Collection<CoexpressionValueObject> |
CoexpressionDao.getCoexpression(Taxon taxon,
BioAssaySet experiment,
boolean quick) |
|
Collection<CoexpressionValueObject> |
CoexpressionDaoImpl.getCoexpression(Taxon taxon,
BioAssaySet experiment,
boolean quick) |
|
Collection<CoexpressionValueObject> |
CoexpressionService.getCoexpression(BioAssaySet experiment,
boolean quick) |
|
Collection<CoexpressionValueObject> |
CoexpressionServiceImpl.getCoexpression(BioAssaySet experiment,
boolean quick) |
|