Package ubic.gemma.persistence.service.common.quantitationtype

Interface QuantitationTypeDao

All Superinterfaces:

BaseDao<QuantitationType>, BaseVoEnabledDao<QuantitationType,QuantitationTypeValueObject>, FilteringDao<QuantitationType>, FilteringVoEnabledDao<QuantitationType,QuantitationTypeValueObject>

All Known Implementing Classes:

QuantitationTypeDaoImpl

public interface QuantitationTypeDao
extends FilteringVoEnabledDao<QuantitationType,QuantitationTypeValueObject>

See Also:

QuantitationType

Method Summary

Modifier and Type	Method	Description
boolean	existsByExpressionExperimentAndVectorType(QuantitationType quantitationType, ExpressionExperiment ee, Class<? extends DesignElementDataVector> dataVectorClass)	Test if a given quantitation type is used by a given experiment for a given vector type.
QuantitationType	find(ExpressionExperiment ee, QuantitationType quantitationType)	Locate a QT associated with the given ee matching the specification of the passed quantitationType, or null if there isn't one.
List<QuantitationType>	loadByDescription(String description)
List<QuantitationTypeValueObject>	loadValueObjectsWithExpressionExperiment(Collection<QuantitationType> qts, ExpressionExperiment ee)

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringDao

count, getFilter, getFilter, getFilter, getFilter, getFilterableProperties, getFilterablePropertyAllowedValues, getFilterablePropertyDescription, getFilterablePropertyIsUsingSubquery, getFilterablePropertyType, getSort, load, load, loadIds

Methods inherited from interface ubic.gemma.persistence.service.FilteringVoEnabledDao

loadValueObjects, loadValueObjects

Method Detail

loadByDescription

List<QuantitationType> loadByDescription(String description)

find

QuantitationType find(ExpressionExperiment ee,
                      QuantitationType quantitationType)

Locate a QT associated with the given ee matching the specification of the passed quantitationType, or null if there isn't one.

Returns:

found QT

existsByExpressionExperimentAndVectorType

boolean existsByExpressionExperimentAndVectorType(QuantitationType quantitationType,
                                                  ExpressionExperiment ee,
                                                  Class<? extends DesignElementDataVector> dataVectorClass)

Test if a given quantitation type is used by a given experiment for a given vector type.

loadValueObjectsWithExpressionExperiment

List<QuantitationTypeValueObject> loadValueObjectsWithExpressionExperiment(Collection<QuantitationType> qts,
                                                                           ExpressionExperiment ee)