Package ubic.gemma.persistence.service.expression.bioAssayData

Class RawAndProcessedExpressionDataVectorServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<BulkExpressionDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.AbstractBulkExpressionDataVectorService<BulkExpressionDataVector>

ubic.gemma.persistence.service.expression.bioAssayData.RawAndProcessedExpressionDataVectorServiceImpl

All Implemented Interfaces:

BaseImmutableService<BulkExpressionDataVector>, BaseReadOnlyService<BulkExpressionDataVector>, BaseService<BulkExpressionDataVector>, BulkExpressionDataVectorService<BulkExpressionDataVector>, RawAndProcessedExpressionDataVectorService

@Service
public class RawAndProcessedExpressionDataVectorServiceImpl
extends AbstractBulkExpressionDataVectorService<BulkExpressionDataVector>
implements RawAndProcessedExpressionDataVectorService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
RawAndProcessedExpressionDataVectorServiceImpl(RawAndProcessedExpressionDataVectorDao mainDao)

Method Summary

Modifier and Type	Method	Description
Collection<BulkExpressionDataVector>	findAndThaw(Collection<QuantitationType> quantitationTypes)
Collection<BulkExpressionDataVector>	findAndThaw(BioAssayDimension bioAssayDimension)
int	removeByCompositeSequence(CompositeSequence cs)
Collection<BulkExpressionDataVector>	thaw(Collection<BulkExpressionDataVector> vectors)	Deprecated.

Methods inherited from class ubic.gemma.persistence.service.expression.bioAssayData.AbstractBulkExpressionDataVectorService

find, find, find, findAndThaw

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.expression.bioAssayData.BulkExpressionDataVectorService

find, find, find, findAndThaw

Constructor Details

RawAndProcessedExpressionDataVectorServiceImpl

@Autowired
public RawAndProcessedExpressionDataVectorServiceImpl(RawAndProcessedExpressionDataVectorDao mainDao)

Method Details

removeByCompositeSequence

@Transactional
public int removeByCompositeSequence(CompositeSequence cs)

Specified by:

removeByCompositeSequence in interface RawAndProcessedExpressionDataVectorService

See Also:

• RawAndProcessedExpressionDataVectorDao.removeByCompositeSequence(CompositeSequence)

findAndThaw

public Collection<BulkExpressionDataVector> findAndThaw(BioAssayDimension bioAssayDimension)

Specified by:

findAndThaw in interface BulkExpressionDataVectorService<BulkExpressionDataVector>

Overrides:

findAndThaw in class AbstractBulkExpressionDataVectorService<BulkExpressionDataVector>

findAndThaw

public Collection<BulkExpressionDataVector> findAndThaw(Collection<QuantitationType> quantitationTypes)

Specified by:

findAndThaw in interface BulkExpressionDataVectorService<BulkExpressionDataVector>

Overrides:

findAndThaw in class AbstractBulkExpressionDataVectorService<BulkExpressionDataVector>

thaw

@Deprecated
@Transactional(readOnly=true)
public Collection<BulkExpressionDataVector> thaw(Collection<BulkExpressionDataVector> vectors)

Deprecated.

Description copied from interface: BulkExpressionDataVectorService

Thaw the given vectors.

Specified by:

thaw in interface BulkExpressionDataVectorService<BulkExpressionDataVector>

Specified by:

thaw in interface RawAndProcessedExpressionDataVectorService

Overrides:

thaw in class AbstractBulkExpressionDataVectorService<BulkExpressionDataVector>