Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Class BlatAssociationServiceImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractService<BlatAssociation>

ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatAssociationServiceImpl

All Implemented Interfaces:

BaseImmutableService<BlatAssociation>, BaseReadOnlyService<BlatAssociation>, BaseService<BlatAssociation>, BlatAssociationService

@Service
public class BlatAssociationServiceImpl
extends AbstractService<BlatAssociation>
implements BlatAssociationService

Spring Service base class for BlatAssociationService, provides access to all services and entities referenced by this service.

See Also:

• BlatAssociationService

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractService

log

Constructor Summary

Constructors

Constructor	Description
BlatAssociationServiceImpl(BlatAssociationDao blatAssociationDao)

Method Summary

Modifier and Type	Method	Description
Collection<BlatAssociation>	find(BioSequence bioSequence)
Collection<BlatAssociation>	find(Gene gene)
Collection<BlatAssociation>	findAndThaw(BioSequence bioSequence)

Methods inherited from class ubic.gemma.persistence.service.AbstractService

countAll, create, create, ensureInSession, ensureInSession, find, findOrCreate, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, findOrCreate, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatAssociationService

create, remove

Constructor Details

BlatAssociationServiceImpl

@Autowired
public BlatAssociationServiceImpl(BlatAssociationDao blatAssociationDao)

Method Details

find

@Transactional(readOnly=true)
public Collection<BlatAssociation> find(BioSequence bioSequence)

Specified by:

find in interface BlatAssociationService

findAndThaw

@Transactional(readOnly=true)
public Collection<BlatAssociation> findAndThaw(BioSequence bioSequence)

Specified by:

findAndThaw in interface BlatAssociationService

find

@Transactional(readOnly=true)
public Collection<BlatAssociation> find(Gene gene)

Specified by:

find in interface BlatAssociationService