Uses of Class
ubic.gemma.rest.util.args.GeneArg
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Packages that use GeneArg Package Description ubic.gemma.rest ubic.gemma.rest.util.args -
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Uses of GeneArg in ubic.gemma.rest
Methods in ubic.gemma.rest with parameters of type GeneArg Modifier and Type Method Description ResponseDataObject<List<GeneEvidenceValueObject>>
GeneWebService. getGeneEvidence(GeneArg<?> geneArg)
Deprecated.ResponseDataObject<List<CoexpressionValueObjectExt>>
GeneWebService. getGeneGeneCoexpression(GeneArg<?> geneArg, GeneArg<?> with, LimitArg limit, Integer stringency)
Retrieves the coexpression of two given genes.ResponseDataObject<List<GeneOntologyTermValueObject>>
GeneWebService. getGeneGoTerms(GeneArg<?> geneArg)
Retrieves the GO terms of the given gene.ResponseDataObject<List<PhysicalLocationValueObject>>
GeneWebService. getGeneLocations(GeneArg<?> geneArg)
Retrieves the physical location of the given gene.PaginatedResponseDataObject<CompositeSequenceValueObject>
GeneWebService. getGeneProbes(GeneArg<?> geneArg, OffsetArg offset, LimitArg limit)
Retrieves the probes (composite sequences) with this gene.ResponseDataObject<List<GeneEvidenceValueObject>>
TaxaWebService. getGenesEvidenceInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg)
Deprecated.ResponseDataObject<List<GeneOntologyTermValueObject>>
TaxaWebService. getTaxonGeneGoTerms(TaxonArg<?> taxonArg, GeneArg<?> geneArg)
ResponseDataObject<List<PhysicalLocationValueObject>>
TaxaWebService. getTaxonGeneLocations(TaxonArg<?> taxonArg, GeneArg<?> geneArg)
Retrieves gene location for the gene on the given taxon.PaginatedResponseDataObject<CompositeSequenceValueObject>
TaxaWebService. getTaxonGeneProbes(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg)
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Uses of GeneArg in ubic.gemma.rest.util.args
Subclasses of GeneArg in ubic.gemma.rest.util.args Modifier and Type Class Description class
GeneEnsemblIdArg
Long argument type for Gene API, referencing the Gene Ensembl ID.class
GeneNcbiIdArg
Long argument type for Gene API, referencing the Gene NCBI ID.class
GeneSymbolArg
String argument type for Gene API.Methods in ubic.gemma.rest.util.args that return GeneArg Modifier and Type Method Description static GeneArg<?>
GeneArg. valueOf(String s)
Used by RS to parse value of request parameters.Methods in ubic.gemma.rest.util.args with parameters of type GeneArg Modifier and Type Method Description List<Gene>
GeneArgService. getEntitiesWithTaxon(GeneArg<?> genes, Taxon taxon)
Obtain genes from a specific taxon.Gene
GeneArgService. getEntityWithTaxon(GeneArg<?> entityArg, Taxon taxon)
Obtain a gene from a specific taxon.List<GeneEvidenceValueObject>
GeneArgService. getGeneEvidence(GeneArg<?> arg, Taxon taxon)
Deprecated.List<GeneOntologyTermValueObject>
GeneArgService. getGeneGoTerms(GeneArg<?> arg)
Returns GO terms for the gene that this GeneArg represents.List<GeneOntologyTermValueObject>
GeneArgService. getGeneGoTermsInTaxon(GeneArg<?> geneArg, Taxon taxon)
Obtain GO terms for the gene in the given taxon.List<PhysicalLocationValueObject>
GeneArgService. getGeneLocation(GeneArg<?> geneArg)
Returns all known locations of the gene(s) that this GeneArg represents.List<PhysicalLocationValueObject>
GeneArgService. getGeneLocationInTaxon(GeneArg<?> arg, Taxon taxon)
Returns all known locations of the gene that this GeneArg represents.Slice<CompositeSequenceValueObject>
GeneArgService. getGeneProbes(GeneArg<?> geneArg, int offset, int limit)
Obtain probes for the gene across all platforms.Slice<CompositeSequenceValueObject>
GeneArgService. getGeneProbesInTaxon(GeneArg<?> geneArg, Taxon taxon, int offset, int limit)
Obtain probes for the gene in the given taxon across all platforms.
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