Uses of Class
ubic.gemma.rest.util.args.QueryArg

Packages that use QueryArg

Package	Description
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of QueryArg in ubic.gemma.rest

Methods in ubic.gemma.rest with parameters of type QueryArg

Modifier and Type	Method	Description
DatasetsWebService.QueriedAndFilteredAndInferredAndPaginatedResponseDataObject<DatasetsWebService.ExpressionExperimentWithSearchResultValueObject>	DatasetsWebService.getDatasets(QueryArg query, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, SortArg<ExpressionExperiment> sortArg)
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.AnnotationWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsAnnotationsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, ExcludeArg<DatasetsWebService.AnnotationWithUsageStatisticsValueObject> exclude, LimitArg limitArg, Integer minFrequency, String category, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms)
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.CategoryWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsCategoriesUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit, StringArrayArg excludedCategoryUris, Boolean excludeFreeTextCategories, StringArrayArg excludedTermUris, Boolean excludeFreeTextTerms, Boolean excludeUncategorizedTerms, Boolean retainMentionedTerms)
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGene(GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene.
Object	DatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers)	Obtain differential expression analysis results for a given gene in a given taxon.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene across all datasets.
PaginatedResponseDataObject<ExperimentExpressionLevelsValueObject>	DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate)	Retrieve the expression levels of a given gene and taxon across all datasets.
DatasetsWebService.QueriedAndFilteredAndInferredAndLimitedResponseDataObject<DatasetsWebService.ArrayDesignWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsPlatformsUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filter, LimitArg limit)
DatasetsWebService.QueriedAndFilteredAndInferredResponseDataObject<DatasetsWebService.TaxonWithUsageStatisticsValueObject>	DatasetsWebService.getDatasetsTaxaUsageStatistics(QueryArg query, FilterArg<ExpressionExperiment> filterArg)
ResponseDataObject<Long>	DatasetsWebService.getNumberOfDatasets(QueryArg query, FilterArg<ExpressionExperiment> filter)
SearchWebService.SearchResultsResponseDataObject	SearchWebService.search(QueryArg query, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg)	Search everything subject to taxon and platform constraints.

Uses of QueryArg in ubic.gemma.rest.util.args

Methods in ubic.gemma.rest.util.args that return QueryArg

Modifier and Type	Method	Description
static QueryArg	QueryArg.valueOf(String s)

Methods in ubic.gemma.rest.util.args with parameters of type QueryArg

Modifier and Type	Method	Description
Set<Long>	DatasetArgService.getIdsForSearchQuery(QueryArg query, Collection<Throwable> queryWarnings)	Shortcut for extracting the result IDs from DatasetArgService.getResultsForSearchQuery(QueryArg, Highlighter, Collection).
Set<Long>	DatasetArgService.getIdsForSearchQuery(QueryArg query, Map<Long,Double> scoreById, Collection<Throwable> queryWarnings)	Shortcut for extracting the result IDs and scores from DatasetArgService.getResultsForSearchQuery(QueryArg, Highlighter, Collection).
List<SearchResult<ExpressionExperiment>>	DatasetArgService.getResultsForSearchQuery(QueryArg query, Highlighter highlighter, Collection<Throwable> queryWarnings)	Obtain the search results for a given query and highlighter.