Uses of Class
ubic.gemma.rest.util.args.TaxonArg
Packages that use TaxonArg
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Uses of TaxonArg in ubic.gemma.rest
Methods in ubic.gemma.rest with parameters of type TaxonArgModifier and TypeMethodDescriptionDatasetsWebService.getDatasetsDifferentialExpressionAnalysisResultsForGeneInTaxon
(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offsetArg, LimitArg limitArg, Double threshold, javax.ws.rs.core.HttpHeaders headers) Obtain differential expression analysis results for a given gene in a given taxon.DatasetsWebService.getDatasetsExpressionLevelsForGeneInTaxon
(TaxonArg<?> taxonArg, GeneArg<?> geneArg, QueryArg queryArg, FilterArg<ExpressionExperiment> filterArg, OffsetArg offsetArg, LimitArg limitArg, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieve the expression levels of a given gene and taxon across all datasets.DatasetsWebService.getDatasetsExpressionLevelsForGenesInTaxon
(DatasetArrayArg datasets, TaxonArg<?> taxonArg, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate) Retrieves the expression levels of given genes on given datasets.TaxaWebService.getTaxonDatasets
(TaxonArg<?> taxonArg, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort) Retrieves datasets for the given taxon.TaxaWebService.getTaxonGeneGoTerms
(TaxonArg<?> taxonArg, GeneArg<?> geneArg) TaxaWebService.getTaxonGeneLocations
(TaxonArg<?> taxonArg, GeneArg<?> geneArg) Retrieves gene location for the gene on the given taxon.TaxaWebService.getTaxonGeneProbes
(TaxonArg<?> taxonArg, GeneArg<?> geneArg, OffsetArg offsetArg, LimitArg limitArg) TaxaWebService.getTaxonGenes
(TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg) TaxaWebService.getTaxonGenesByIds
(TaxonArg<?> taxonArg, GeneArrayArg geneArg) Retrieves genes matching the identifier on the given taxon.TaxaWebService.getTaxonGenesOverlappingChromosome
(TaxonArg<?> taxonArg, String chromosomeName, String strand, Long start, Integer size) Finds genes overlapping a given region.SearchWebService.search
(QueryArg query, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg) Search everything subject to taxon and platform constraints.AnnotationsWebService.searchTaxonDatasets
(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort) Same asAnnotationsWebService.searchDatasets(StringArrayArg, FilterArg, OffsetArg, LimitArg, SortArg)
but also filters by taxon.AnnotationsWebService.searchTaxonDatasetsByQueryInPath
(TaxonArg<?> taxonArg, StringArrayArg query, FilterArg<ExpressionExperiment> filter, OffsetArg offset, LimitArg limit, SortArg<ExpressionExperiment> sort) -
Uses of TaxonArg in ubic.gemma.rest.util.args
Subclasses of TaxonArg in ubic.gemma.rest.util.argsModifier and TypeClassDescriptionclass
Long argument type for taxon API, referencing the Taxon ID.class
String argument type for taxon API, referencing the Taxon scientific name or common name.class
Long argument type for taxon API, referencing the Taxon ID.Methods in ubic.gemma.rest.util.args that return TaxonArgModifier and TypeMethodDescriptionstatic TaxonArg
<?> Used by RS to parse value of request parameters.Methods in ubic.gemma.rest.util.args with parameters of type TaxonArgModifier and TypeMethodDescriptionTaxonArgService.getGenesOnChromosome
(TaxonArg<?> arg, String chromosomeName, String strand, long start, int size) Lists Genes overlapping a location on a specific chromosome on a taxon that this TaxonArg represents.