Package ubic.gemma.web.controller.expression.biomaterial

Class BioMaterialController

java.lang.Object

ubic.gemma.web.controller.expression.biomaterial.BioMaterialController

@Controller
@RequestMapping("/bioMaterial")
public class BioMaterialController
extends Object

Author:

keshav

Constructor Summary

Constructors

Constructor	Description
BioMaterialController()

Method Summary

Modifier and Type	Method	Description
void	addFactorValueTo(Collection<Long> bmIds, EntityDelegator<FactorValue> factorValueId)	AJAX
org.springframework.web.servlet.ModelAndView	annot(Long id)
Collection<AnnotationValueObject>	getAnnotation(EntityDelegator<BioMaterial> bm)
Collection<BioMaterial>	getBioMaterials(Collection<Long> ids)
Collection<BioMaterial>	getBioMaterialsForEE(Long id)
Collection<FactorValueValueObject>	getFactorValues(EntityDelegator<BioMaterial> bm)
org.springframework.web.servlet.ModelAndView	show(Long id, Long dimensionId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

BioMaterialController

public BioMaterialController()

Method Details

addFactorValueTo

public void addFactorValueTo(Collection<Long> bmIds,
 EntityDelegator<FactorValue> factorValueId)

AJAX

Parameters:

factorValueId - given a collection of biomaterial ids, and a factor value id will add that factor value to all of the biomaterials in the collection. If the factor is already defined for one of the biomaterials will remove the previous one and add the new one.

annot

@RequestMapping(value="/annotate.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView annot(@RequestParam("eeid")
 Long id)

getAnnotation

public Collection<AnnotationValueObject> getAnnotation(EntityDelegator<BioMaterial> bm)

getBioMaterials

public Collection<BioMaterial> getBioMaterials(Collection<Long> ids)

getBioMaterialsForEE

public Collection<BioMaterial> getBioMaterialsForEE(Long id)

Parameters:

id - of experiment

getFactorValues

public Collection<FactorValueValueObject> getFactorValues(EntityDelegator<BioMaterial> bm)

show

@RequestMapping(value={"/showBioMaterial.html","/"},
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView show(@RequestParam("id")
 Long id,
 @RequestParam(value="dimension",required=false)
 Long dimensionId)