Package ubic.gemma.web.controller.expression.biomaterial

Class BioMaterialController

java.lang.Object

ubic.gemma.web.controller.expression.biomaterial.BioMaterialController

@Controller
@RequestMapping("/bioMaterial")
public class BioMaterialController
extends Object

Author:

keshav

Constructor Summary

Constructors

Constructor	Description
BioMaterialController()

Method Summary

Modifier and Type	Method	Description
void	addFactorValueTo(Collection<Long> bmIds, EntityDelegator<FactorValue> factorValueId)	AJAX
ModelAndView	annot(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
Collection<AnnotationValueObject>	getAnnotation(EntityDelegator<BioMaterial> bm)
Collection<BioMaterial>	getBioMaterials(Collection<Long> ids)
Collection<BioMaterial>	getBioMaterialsForEE(Long id)
Collection<FactorValueValueObject>	getFactorValues(EntityDelegator<BioMaterial> bm)
void	setBioMaterialService(BioMaterialService bioMaterialService)
void	setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void	setFactorValueService(FactorValueService factorValueService)
void	setOntologyService(OntologyService ontologyService)
ModelAndView	show(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BioMaterialController

public BioMaterialController()

Method Detail

addFactorValueTo

public void addFactorValueTo(Collection<Long> bmIds,
                             EntityDelegator<FactorValue> factorValueId)

AJAX

Parameters:

factorValueId - given a collection of biomaterial ids, and a factor value id will add that factor value to all of the biomaterials in the collection. If the factor is already defined for one of the biomaterials will remove the previous one and add the new one.

annot

@RequestMapping("/annotate.html")
public ModelAndView annot(javax.servlet.http.HttpServletRequest request,
                          javax.servlet.http.HttpServletResponse response)

getAnnotation

public Collection<AnnotationValueObject> getAnnotation(EntityDelegator<BioMaterial> bm)

getBioMaterials

public Collection<BioMaterial> getBioMaterials(Collection<Long> ids)

getBioMaterialsForEE

public Collection<BioMaterial> getBioMaterialsForEE(Long id)

Parameters:

id - of experiment

getFactorValues

public Collection<FactorValueValueObject> getFactorValues(EntityDelegator<BioMaterial> bm)

setBioMaterialService

public void setBioMaterialService(BioMaterialService bioMaterialService)

setExpressionExperimentService

public void setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

setFactorValueService

public void setFactorValueService(FactorValueService factorValueService)

Parameters:

factorValueService - the factorValueService to set

setOntologyService

public void setOntologyService(OntologyService ontologyService)

show

@RequestMapping({"/showBioMaterial.html","/"})
public ModelAndView show(javax.servlet.http.HttpServletRequest request,
                         javax.servlet.http.HttpServletResponse response)