Uses of Interface
ubic.basecode.dataStructure.matrix.Matrix2D
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Packages that use Matrix2D Package Description ubic.basecode.datafilter ubic.basecode.dataStructure.matrix ubic.basecode.io.reader ubic.basecode.io.writer -
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Uses of Matrix2D in ubic.basecode.datafilter
Classes in ubic.basecode.datafilter with type parameters of type Matrix2D Modifier and Type Class Description class
AbstractFilter<M extends Matrix2D<R,C,V>,R,C,V>
Base implementation of the filter interface.class
AffymetrixProbeNameFilter<M extends Matrix2D<R,C,V>,R,C,V>
Remove probes that have names meeting certain rules indicating they may have low reliability.interface
Filter<M extends Matrix2D<R,C,V>,R,C,V>
An interface representing the functionality of a class that can filter 2-d matrix-based data by row-oriented criteria.class
RowAbsentFilter<M extends Matrix2D<R,C,V>,R,C,V>
Filter a data matrix according to flags given in a separate matrix.class
RowMissingFilter<M extends Matrix2D<R,C,V>,R,C,V>
Remove rows from a matrix that are missing too many points.class
RowNameFilter<M extends Matrix2D<R,C,V>,R,C,V>
Remove or retain rows that are on a list. -
Uses of Matrix2D in ubic.basecode.dataStructure.matrix
Subinterfaces of Matrix2D in ubic.basecode.dataStructure.matrix Modifier and Type Interface Description interface
ObjectMatrix<R,C,V>
interface
PrimitiveMatrix<R,C,V>
Matrix that holds primitives, with an available object representation of the values.Classes in ubic.basecode.dataStructure.matrix that implement Matrix2D Modifier and Type Class Description class
AbstractMatrix<R,C,V>
class
CompressedBitMatrix<R,C>
Named compressed sparse bit matrix.class
CompressedSparseDoubleMatrix<R,C>
Supports sparse matrices (where sparse means most values are zero, not that they are missing).class
DenseDoubleMatrix<R,C>
A dense matrix of doubles that knows about row and column names.class
DoubleMatrix<R,C>
Abstract base class for 2D matrices of double values with named columns and rows.class
FastRowAccessDoubleMatrix<R,C>
Dense 2D matrix implementation designed for very fast access of entire rows.class
IntegerMatrix<R,C>
class
ObjectMatrixImpl<R,C,V>
Matrix that can hold any type of objectclass
SparseDoubleMatrix<R,C>
A sparse matrix that knows about row and column names.class
SparseRaggedDoubleMatrix<R,C>
A sparse matrix class where the rows are ragged and compressed.class
StringMatrix<R,C>
A NamedMatrix containing String objects.Methods in ubic.basecode.dataStructure.matrix with parameters of type Matrix2D Modifier and Type Method Description static <R,C,V>
VMatrixUtil. getObject(Matrix2D<R,C,V> matrix, int rowIndex, int colIndex)
static <R,C,V>
V[]MatrixUtil. getRow(Matrix2D<R,C,V> matrix, int rowIndex)
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Uses of Matrix2D in ubic.basecode.io.reader
Classes in ubic.basecode.io.reader with type parameters of type Matrix2D Modifier and Type Class Description class
AbstractMatrixReader<M extends Matrix2D<String,String,V>,V>
Abstract class representing an object that can read in aMatrix2D
from a file. -
Uses of Matrix2D in ubic.basecode.io.writer
Methods in ubic.basecode.io.writer with parameters of type Matrix2D Modifier and Type Method Description <V> void
MatrixWriter. writeMatrix(Matrix2D<R,C,V> matrix, boolean printNames)
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