Interface DifferentialExpressionResultCache

All Known Implementing Classes:

DifferentialExpressionResultCacheImpl

public interface DifferentialExpressionResultCache

Cache for differential expression results. This actually manages two caches; one is for resultset x gene results, requested for the (typically) main visualization and meta-analysis. The second is of the "top hits" for a resultset.

Author:

paul

Method Summary

Modifier and Type	Method	Description
void	addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)
void	addToCache(DiffExprGeneSearchResult diffExForCache)
void	addToResultSetCountsCache(Long resultSetId, ResultSetCountsValueObject counts)	Populate the per-result-set hit-list counts cache.
void	addToTopHitsCache(ExpressionAnalysisResultSet resultSet, List<DifferentialExpressionValueObject> items)
void	clearCache()
void	clearCache(Long resultSetId)	Remove all elements from the cache for the given result set, if the cache exists.
void	clearResultSetCountsCache(Long resultSetId)	Evict a single result-set entry from the counts cache (called on analysis deletion).
void	clearTopHitCache(Long resultSetId)	Remove all elements from the top hits cache for the given result set, if the cache exists.
DiffExprGeneSearchResult	get(Long resultSet, Long g)
Collection<DiffExprGeneSearchResult>	get(Long resultSet, Collection<Long> genes)
ResultSetCountsValueObject	getResultSetCounts(Long resultSetId)	Retrieve cached per-result-set hit-list counts (the inputs to DiffExResultSetSummaryValueObject's numberOfDiffExpressedProbes / up / down counts).
List<DifferentialExpressionValueObject>	getTopHits(ExpressionAnalysisResultSet resultSet)
Boolean	isEnabled()
void	setEnabled(Boolean enabled)

Method Details

addToCache

void addToCache(DiffExprGeneSearchResult diffExForCache)

addToCache

void addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)

clearCache

void clearCache()

clearCache

void clearCache(Long resultSetId)

Remove all elements from the cache for the given result set, if the cache exists.

Parameters:

resultSetId - - specific cache to be cleared.

clearTopHitCache

void clearTopHitCache(Long resultSetId)

Remove all elements from the top hits cache for the given result set, if the cache exists.

Parameters:

resultSetId - id

get

Collection<DiffExprGeneSearchResult> get(Long resultSet,
 Collection<Long> genes)

get

@Nullable
DiffExprGeneSearchResult get(Long resultSet,
 Long g)

isEnabled

Boolean isEnabled()

setEnabled

void setEnabled(Boolean enabled)

addToTopHitsCache

void addToTopHitsCache(ExpressionAnalysisResultSet resultSet,
 List<DifferentialExpressionValueObject> items)

getTopHits

@Nullable
List<DifferentialExpressionValueObject> getTopHits(ExpressionAnalysisResultSet resultSet)

Parameters:

resultSet - result set

Returns:

top hits, or null.

getResultSetCounts

@Nullable
ResultSetCountsValueObject getResultSetCounts(Long resultSetId)

Retrieve cached per-result-set hit-list counts (the inputs to DiffExResultSetSummaryValueObject's numberOfDiffExpressedProbes / up / down counts).

Parameters:

resultSetId - id

Returns:

counts VO, or null on miss.

addToResultSetCountsCache

void addToResultSetCountsCache(Long resultSetId,
 ResultSetCountsValueObject counts)

Populate the per-result-set hit-list counts cache.

clearResultSetCountsCache

void clearResultSetCountsCache(Long resultSetId)

Evict a single result-set entry from the counts cache (called on analysis deletion).