Class DifferentialExpressionResultCacheImpl

java.lang.Object

ubic.gemma.persistence.service.analysis.expression.diff.DifferentialExpressionResultCacheImpl

All Implemented Interfaces:

org.springframework.beans.factory.InitializingBean, DifferentialExpressionResultCache

@Component
public class DifferentialExpressionResultCacheImpl
extends Object
implements DifferentialExpressionResultCache, org.springframework.beans.factory.InitializingBean

Cache for data from differential expression result queries.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionResultCacheImpl()

Method Summary

Modifier and Type	Method	Description
void	addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)
void	addToCache(DiffExprGeneSearchResult diffExForCache)
void	addToResultSetCountsCache(Long resultSetId, ResultSetCountsValueObject counts)	Populate the per-result-set hit-list counts cache.
void	addToTopHitsCache(ExpressionAnalysisResultSet resultSet, List<DifferentialExpressionValueObject> items)
void	afterPropertiesSet()
void	clearCache()
void	clearCache(Long resultSetId)	Remove all elements from the cache for the given result set, if the cache exists.
void	clearResultSetCountsCache(Long resultSetId)	Evict a single result-set entry from the counts cache (called on analysis deletion).
void	clearTopHitCache(Long resultSetId)	Remove all elements from the top hits cache for the given result set, if the cache exists.
DiffExprGeneSearchResult	get(Long resultSet, Long g)
Collection<DiffExprGeneSearchResult>	get(Long resultSet, Collection<Long> genes)
ResultSetCountsValueObject	getResultSetCounts(Long resultSetId)	Retrieve cached per-result-set hit-list counts (the inputs to DiffExResultSetSummaryValueObject's numberOfDiffExpressedProbes / up / down counts).
List<DifferentialExpressionValueObject>	getTopHits(ExpressionAnalysisResultSet resultSet)
Boolean	isEnabled()
void	setEnabled(Boolean enabled)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DifferentialExpressionResultCacheImpl

public DifferentialExpressionResultCacheImpl()

Method Details

addToCache

public void addToCache(DiffExprGeneSearchResult diffExForCache)

Specified by:

addToCache in interface DifferentialExpressionResultCache

addToCache

public void addToCache(Collection<DiffExprGeneSearchResult> diffExForCache)

Specified by:

addToCache in interface DifferentialExpressionResultCache

clearCache

public void clearCache()

Specified by:

clearCache in interface DifferentialExpressionResultCache

clearCache

public void clearCache(Long resultSetId)

Description copied from interface: DifferentialExpressionResultCache

Remove all elements from the cache for the given result set, if the cache exists.

Specified by:

clearCache in interface DifferentialExpressionResultCache

Parameters:

resultSetId - - specific cache to be cleared.

clearTopHitCache

public void clearTopHitCache(Long resultSetId)

Description copied from interface: DifferentialExpressionResultCache

Remove all elements from the top hits cache for the given result set, if the cache exists.

Specified by:

clearTopHitCache in interface DifferentialExpressionResultCache

Parameters:

resultSetId - id

get

public Collection<DiffExprGeneSearchResult> get(Long resultSet,
 Collection<Long> genes)

Specified by:

get in interface DifferentialExpressionResultCache

get

@Nullable
public DiffExprGeneSearchResult get(Long resultSet,
 Long g)

Specified by:

get in interface DifferentialExpressionResultCache

isEnabled

public Boolean isEnabled()

Specified by:

isEnabled in interface DifferentialExpressionResultCache

setEnabled

public void setEnabled(Boolean enabled)

Specified by:

setEnabled in interface DifferentialExpressionResultCache

addToTopHitsCache

public void addToTopHitsCache(ExpressionAnalysisResultSet resultSet,
 List<DifferentialExpressionValueObject> items)

Specified by:

addToTopHitsCache in interface DifferentialExpressionResultCache

getTopHits

@Nullable
public List<DifferentialExpressionValueObject> getTopHits(ExpressionAnalysisResultSet resultSet)

Specified by:

getTopHits in interface DifferentialExpressionResultCache

Parameters:

resultSet - result set

Returns:

top hits, or null.

getResultSetCounts

@Nullable
public ResultSetCountsValueObject getResultSetCounts(Long resultSetId)

Description copied from interface: DifferentialExpressionResultCache

Retrieve cached per-result-set hit-list counts (the inputs to DiffExResultSetSummaryValueObject's numberOfDiffExpressedProbes / up / down counts).

Specified by:

getResultSetCounts in interface DifferentialExpressionResultCache

Parameters:

resultSetId - id

Returns:

counts VO, or null on miss.

addToResultSetCountsCache

public void addToResultSetCountsCache(Long resultSetId,
 ResultSetCountsValueObject counts)

Description copied from interface: DifferentialExpressionResultCache

Populate the per-result-set hit-list counts cache.

Specified by:

addToResultSetCountsCache in interface DifferentialExpressionResultCache

clearResultSetCountsCache

public void clearResultSetCountsCache(Long resultSetId)

Description copied from interface: DifferentialExpressionResultCache

Evict a single result-set entry from the counts cache (called on analysis deletion).

Specified by:

clearResultSetCountsCache in interface DifferentialExpressionResultCache

afterPropertiesSet

public void afterPropertiesSet()

Specified by:

afterPropertiesSet in interface org.springframework.beans.factory.InitializingBean