Class TwoChannelMissingValuesTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.analysis.preprocess.TwoChannelMissingValuesTest

public class TwoChannelMissingValuesTest
extends BaseSpringContextTest5

Author:

pavlidis

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
TwoChannelMissingValuesTest()

Method Summary

Modifier and Type	Method	Description
void	testMissingValue()
void	testMissingValueGSE11017()	Was giving all missing values.
final void	testMissingValueGSE523()
void	testMissingValueGSE56()	GSE56 is corrupt: there is no Channel 1 signal value in the data file.

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

TwoChannelMissingValuesTest

public TwoChannelMissingValuesTest()

Method Details

testMissingValue

@Test
@Tag("slow")
public void testMissingValue()
                      throws Exception

Throws:

Exception

testMissingValueGSE523

@Test
@Tag("slow")
public final void testMissingValueGSE523()
                                  throws Exception

Throws:

Exception

testMissingValueGSE11017

@Test
@Tag("slow")
public void testMissingValueGSE11017()
                              throws Exception

Was giving all missing values.

Throws:

Exception

testMissingValueGSE56

@Test
@Tag("slow")
public void testMissingValueGSE56()
                           throws Exception

GSE56 is corrupt: there is no Channel 1 signal value in the data file.

Throws:

Exception