Class ArrayDesignReportServiceTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.analysis.report.ArrayDesignReportServiceTest

public class ArrayDesignReportServiceTest
extends BaseSpringContextTest5

Author:

pavlidis

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
ArrayDesignReportServiceTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testAReportIsAppliedToThePlatformItWasWrittenFor()	The other half: the report still reaches the platform it was written for.
void	testAReportWrittenForADifferentPlatformIsNotApplied()	A report is one file per database id, so an id that comes to mean a different platform hands that platform the previous occupant's counts — silently, because they are plausible numbers either way.
void	testGenerateArrayDesignGeneMappingEvent()
void	testGenerateArrayDesignSequenceAnalysisEvent()
void	testGenerateArrayDesignSequenceUpdateEvent()

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArrayDesignReportServiceTest

public ArrayDesignReportServiceTest()

Method Details

setUp

@BeforeEach
public void setUp()
           throws Exception

Throws:

Exception

testGenerateArrayDesignGeneMappingEvent

@Test
public void testGenerateArrayDesignGeneMappingEvent()

testGenerateArrayDesignSequenceAnalysisEvent

@Test
public void testGenerateArrayDesignSequenceAnalysisEvent()

testGenerateArrayDesignSequenceUpdateEvent

@Test
public void testGenerateArrayDesignSequenceUpdateEvent()

testAReportWrittenForADifferentPlatformIsNotApplied

@Test
public void testAReportWrittenForADifferentPlatformIsNotApplied()

A report is one file per database id, so an id that comes to mean a different platform hands that platform the previous occupant's counts — silently, because they are plausible numbers either way.

Not hypothetical. On 2026-08-26 PlatformsWebServiceTest.testMicroarrayGeneCountsAreNullWithoutAReport asserted null gene counts for a freshly seeded microarray and read 0, out of a two-day-old report written for a different test platform that had held the same id in a previous gemdtest. The report directory lives under gemma.appdata.home and outlives the database; the ids do not.

testAReportIsAppliedToThePlatformItWasWrittenFor

@Test
public void testAReportIsAppliedToThePlatformItWasWrittenFor()

The other half: the report still reaches the platform it was written for.