Package ubic.gemma.core.analysis.sequence

Class ProbeMapperTest

java.lang.Object

ubic.gemma.core.analysis.sequence.ProbeMapperTest

public class ProbeMapperTest
extends Object

Unaware of the Gemma database but uses the hg19 and mm10 databases (tests will not work with hg38)

Author:

pavlidis

Constructor Summary

Constructors

Constructor	Description
ProbeMapperTest()

Method Summary

Modifier and Type	Method	Description
static void	setUp()
static void	tearDown()
void	testComputeSpecificityA()
void	testComputeSpecificityB()
void	testComputeSpecificityC()
void	testComputeSpecificityD()
void	testIntronIssues()
void	testLocateGene()
void	testLocateGeneOnWrongStrand()
void	testProcessBlatResults()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ProbeMapperTest

public ProbeMapperTest()

Method Details

setUp

public static void setUp()
                  throws Exception

Throws:

Exception

tearDown

public static void tearDown()

testComputeSpecificityA

public void testComputeSpecificityA()

testComputeSpecificityB

public void testComputeSpecificityB()

testComputeSpecificityC

public void testComputeSpecificityC()

testComputeSpecificityD

public void testComputeSpecificityD()

testLocateGene

public void testLocateGene()

testLocateGeneOnWrongStrand

public void testLocateGeneOnWrongStrand()

testProcessBlatResults

public void testProcessBlatResults()

testIntronIssues

public void testIntronIssues()