Class ArrayDesignSequenceAlignmentandMappingTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.loader.expression.arrayDesign.AbstractArrayDesignProcessingTest

ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignSequenceAlignmentandMappingTest

@Tag("goldenPath")
@ExtendWith(NetworkAvailableExtension.class)
public class ArrayDesignSequenceAlignmentandMappingTest
extends AbstractArrayDesignProcessingTest

Author:

pavlidis

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
ArrayDesignSequenceAlignmentandMappingTest()

Method Summary

Modifier and Type	Method	Description
final void	tearDown()
final void	testProcessArrayDesign()

Methods inherited from class AbstractArrayDesignProcessingTest

getAd, setupArrayDesign

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ArrayDesignSequenceAlignmentandMappingTest

public ArrayDesignSequenceAlignmentandMappingTest()

Method Details

testProcessArrayDesign

@Test
@Tag("slow")
@NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/")
public final void testProcessArrayDesign()
                                  throws Exception

Throws:

Exception

tearDown

@AfterEach
public final void tearDown()

Overrides:

tearDown in class AbstractArrayDesignProcessingTest