Package ubic.gemma.core.loader.expression.cellxgene

Class CellXGeneAnnDataSingleCellDataLoaderTest

java.lang.Object

ubic.gemma.core.loader.expression.cellxgene.CellXGeneAnnDataSingleCellDataLoaderTest

public class CellXGeneAnnDataSingleCellDataLoaderTest
extends Object

Constructor Summary

Constructors

Constructor	Description
CellXGeneAnnDataSingleCellDataLoaderTest()

Method Summary

Modifier and Type	Method	Description
void	testKeepPooledSample()	Trimmed fixture derived from the CELLxGENE "HypoMap" atlas (a unified single-cell atlas of the murine hypothalamus), which contains a "pooled" donor alongside the individual SRR donors.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CellXGeneAnnDataSingleCellDataLoaderTest

public CellXGeneAnnDataSingleCellDataLoaderTest()

Method Details

testKeepPooledSample

public void testKeepPooledSample()
                          throws IOException

Trimmed fixture derived from the CELLxGENE "HypoMap" atlas (a unified single-cell atlas of the murine hypothalamus), which contains a "pooled" donor alongside the individual SRR donors. See make_cellxgene_pooled_fixture.py next to the fixture for how it was produced.

This test originally downloaded dataset d3be7423-d664-4913-89a9-a506cae4c28f live from CELLxGENE, but that dataset id was removed from the index when the atlas was re-published. As of this writing HypoMap lives under:

• collection id: d86517f0-fa7e-4266-b82e-a521350d6d36
• dataset id: 87b802cc-73ca-422a-8cc7-6d6d38449b3f

Throws:

IOException