Package ubic.gemma.core.loader.expression.geo

Class GeoConverterTest

java.lang.Object
org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
ubic.gemma.core.util.test.BaseTest
ubic.gemma.core.util.test.BaseIntegrationTest
ubic.gemma.core.loader.expression.geo.GeoConverterTest
All Implemented Interfaces:
org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware
public class GeoConverterTest extends BaseIntegrationTest
Unit test for GeoConversion Added extension BaseSpringContextTest as want Taxon Service to be called
Author:
pavlidis

  • Field Details

  • Constructor Details

    • GeoConverterTest

      public GeoConverterTest()

  • Method Details

    • test5C

      @NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/") public final void test5C()

    • testConvertDataDoubles

      public void testConvertDataDoubles()

    • testConvertDataIntegers

      public void testConvertDataIntegers()

    • testConvertGenePix

      public void testConvertGenePix() throws Exception
      Throws:
      Exception

    • testConvertGSE106

      public void testConvertGSE106() throws Exception
      Throws:
      Exception

    • testConvertGSE18Stress

      public void testConvertGSE18Stress() throws Exception
      Throws:
      Exception

    • testConvertGSE2122SAGE

      public void testConvertGSE2122SAGE() throws Exception
      Throws:
      Exception

    • testConvertGSE29014

      public void testConvertGSE29014() throws Exception
      Throws:
      Exception

    • testConvertGSE2982

      public void testConvertGSE2982() throws Exception
      Throws:
      Exception

    • testConvertGSE360

      public void testConvertGSE360() throws Exception
      Throws:
      Exception

    • testConvertGSE3791

      public void testConvertGSE3791() throws Exception
      Throws:
      Exception

    • testConvertGSE404

      public void testConvertGSE404() throws Exception
      Throws:
      Exception

    • testConvertGSE4229IMAGE

      public void testConvertGSE4229IMAGE() throws Exception
      Throws:
      Exception

    • testConvertGse59

      public void testConvertGse59() throws Exception
      Throws:
      Exception

    • testConvertGSE60

      public void testConvertGSE60() throws Exception
      Throws:
      Exception

    • testConvertGSE235534

      public void testConvertGSE235534() throws Exception
      Throws:
      Exception

    • testConvertMultiSeriesPerSample

      public void testConvertMultiSeriesPerSample() throws Exception
      Throws:
      Exception

    • testConvertMultiTaxonDatasetGSE7540

      public void testConvertMultiTaxonDatasetGSE7540() throws Exception
      Throws:
      Exception

    • testConvertWithLotsOfPlatforms

      public void testConvertWithLotsOfPlatforms() throws Exception
      Throws:
      Exception

    • testFetchAndLoadGSE8294

      public void testFetchAndLoadGSE8294() throws Exception
      Throws:
      Exception

    • testGPL6096ExonArray

      public void testGPL6096ExonArray() throws Exception
      Throws:
      Exception

    • testGSE44903

      public final void testGSE44903() throws Exception
      Throws:
      Exception

    • testGSE8872

      public final void testGSE8872() throws Exception
      Throws:
      Exception

    • testIllegalArgumentExceptionChannel1Channel2taxonDifferent

      public void testIllegalArgumentExceptionChannel1Channel2taxonDifferent() throws Exception
      Throws:
      Exception

    • testIllegalArgumentExceptionMultipleTaxaOnArrayWithNoOrganismColumn

      public void testIllegalArgumentExceptionMultipleTaxaOnArrayWithNoOrganismColumn() throws Exception
      Throws:
      Exception

    • testImageClones

      public void testImageClones() throws Exception
      Throws:
      Exception

    • testParseGSE18707

      public void testParseGSE18707() throws Exception
      Throws:
      Exception

    • testParseGSE44625

      public void testParseGSE44625() throws Exception
      Throws:
      Exception

    • testSingleTaxonOnArrayWithNoOrganismColumn

      public void testSingleTaxonOnArrayWithNoOrganismColumn() throws Exception
      Throws:
      Exception

    • testSplitByPlatform

      public void testSplitByPlatform() throws Exception
      Throws:
      Exception

    • testWithImageNoGenbank

      public final void testWithImageNoGenbank() throws Exception
      Throws:
      Exception

    • testWithImages

      public final void testWithImages() throws Exception
      Throws:
      Exception

    • testMakeTitle

      public final void testMakeTitle()

    • testParseValue

      public void testParseValue()