Class GeoConverterTest

java.lang.Object
ubic.gemma.core.util.test.BaseTest5
ubic.gemma.core.util.test.BaseIntegrationTest5
ubic.gemma.core.loader.expression.geo.GeoConverterTest
@ExtendWith(NetworkAvailableExtension.class) public class GeoConverterTest extends BaseIntegrationTest5
Unit test for GeoConversion Added extension BaseIntegrationTest5 as want Taxon Service to be called
Author:
pavlidis

  • Constructor Details

    • GeoConverterTest

      public GeoConverterTest()

  • Method Details

    • test5C

      @Test @Tag("slow") @NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/") public final void test5C()

    • testConvertDataDoubles

      @Test public void testConvertDataDoubles()

    • testConvertDataIntegers

      @Test public void testConvertDataIntegers()

    • testConvertGenePix

      @Test public void testConvertGenePix() throws Exception
      Throws:
      Exception

    • testConvertGSE106

      @Test public void testConvertGSE106() throws Exception
      Throws:
      Exception

    • testConvertGSE18Stress

      @Test public void testConvertGSE18Stress() throws Exception
      Throws:
      Exception

    • testConvertGSE2122SAGE

      @Test public void testConvertGSE2122SAGE() throws Exception
      Throws:
      Exception

    • testConvertGSE29014

      @Test public void testConvertGSE29014() throws Exception
      Throws:
      Exception

    • testConvertGSE2982

      @Test public void testConvertGSE2982() throws Exception
      Throws:
      Exception

    • testConvertGSE360

      @Test public void testConvertGSE360() throws Exception
      Throws:
      Exception

    • testConvertGSE3791

      @Test public void testConvertGSE3791() throws Exception
      Throws:
      Exception

    • testConvertGSE404

      @Test public void testConvertGSE404() throws Exception
      Throws:
      Exception

    • testConvertGSE4229IMAGE

      @Test public void testConvertGSE4229IMAGE() throws Exception
      Throws:
      Exception

    • testConvertGse59

      @Test public void testConvertGse59() throws Exception
      Throws:
      Exception

    • testConvertGSE60

      @Test public void testConvertGSE60() throws Exception
      Throws:
      Exception

    • testConvertGSE235534

      @Test public void testConvertGSE235534() throws Exception
      Throws:
      Exception

    • testConvertMultiSeriesPerSample

      @Test public void testConvertMultiSeriesPerSample() throws Exception
      Throws:
      Exception

    • testConvertMultiTaxonDatasetGSE7540

      @Test public void testConvertMultiTaxonDatasetGSE7540() throws Exception
      Throws:
      Exception

    • testConvertWithLotsOfPlatforms

      @Test public void testConvertWithLotsOfPlatforms() throws Exception
      Throws:
      Exception

    • testFetchAndLoadGSE8294

      @Test public void testFetchAndLoadGSE8294() throws Exception
      Throws:
      Exception

    • testGPL6096ExonArray

      @Test public void testGPL6096ExonArray() throws Exception
      Throws:
      Exception

    • testGSE44903

      @Test public final void testGSE44903() throws Exception
      Throws:
      Exception

    • testGSE8872

      @Test public final void testGSE8872() throws Exception
      Throws:
      Exception

    • testIllegalArgumentExceptionChannel1Channel2taxonDifferent

      @Test public void testIllegalArgumentExceptionChannel1Channel2taxonDifferent() throws Exception
      Throws:
      Exception

    • testIllegalArgumentExceptionMultipleTaxaOnArrayWithNoOrganismColumn

      @Test public void testIllegalArgumentExceptionMultipleTaxaOnArrayWithNoOrganismColumn() throws Exception
      Throws:
      Exception

    • testImageClones

      @Test public void testImageClones() throws Exception
      Throws:
      Exception

    • testParseGSE18707

      @Test public void testParseGSE18707() throws Exception
      Throws:
      Exception

    • testParseGSE44625

      @Test public void testParseGSE44625() throws Exception
      Throws:
      Exception

    • testSingleTaxonOnArrayWithNoOrganismColumn

      @Test public void testSingleTaxonOnArrayWithNoOrganismColumn() throws Exception
      Throws:
      Exception

    • testSplitByPlatform

      @Test public void testSplitByPlatform() throws Exception
      Throws:
      Exception

    • testWithImageNoGenbank

      @Test @Tag("slow") public final void testWithImageNoGenbank() throws Exception
      Throws:
      Exception

    • testWithImages

      @Test public final void testWithImages() throws Exception
      Throws:
      Exception

    • testMakeTitle

      @Test public final void testMakeTitle()

    • testParseValue

      @Test public void testParseValue()