Package ubic.gemma.core.loader.expression.geo.singleCell

Class GeoMexSingleCellDataLoaderConfigurerTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseTest

ubic.gemma.core.loader.expression.geo.singleCell.GeoMexSingleCellDataLoaderConfigurerTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
@NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/")
public class GeoMexSingleCellDataLoaderConfigurerTest
extends BaseTest

Field Summary

Fields

Modifier and Type	Field	Description
final NetworkAvailableRule	networkAvailableRule

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
GeoMexSingleCellDataLoaderConfigurerTest()

Method Summary

Modifier and Type	Method	Description
void	testDetect10xUnfiltered10XData()
void	testGSE132355()
void	testGSE143355()
void	testGSE178226()
void	testGSE198033()
void	testGSE217511()	This is an older single-cell dataset with many typos in the GEO record.
void	testGSE221042()
void	testGSE223423()
void	testGSE255369()
void	testGSE269482()
void	testGSE280175()
void	testGSE295078()
void	testParallelFiltering()

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

networkAvailableRule

public final NetworkAvailableRule networkAvailableRule

Constructor Details

GeoMexSingleCellDataLoaderConfigurerTest

public GeoMexSingleCellDataLoaderConfigurerTest()

Method Details

testDetect10xUnfiltered10XData

public void testDetect10xUnfiltered10XData()
                                    throws IOException

Throws:

IOException

testGSE269482

public void testGSE269482()
                   throws IOException,
NoSingleCellDataFoundException

Throws:

IOException

NoSingleCellDataFoundException

testGSE217511

public void testGSE217511()
                   throws IOException,
NoSingleCellDataFoundException

This is an older single-cell dataset with many typos in the GEO record.

Throws:

IOException

NoSingleCellDataFoundException

testGSE178226

public void testGSE178226()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE280175

public void testGSE280175()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE221042

public void testGSE221042()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE223423

public void testGSE223423()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE143355

public void testGSE143355()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE198033

public void testGSE198033()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE132355

public void testGSE132355()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE295078

public void testGSE295078()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE255369

public void testGSE255369()
                   throws IOException

Throws:

IOException

testParallelFiltering

public void testParallelFiltering()
                           throws IOException,
NoSingleCellDataFoundException

Throws:

IOException

NoSingleCellDataFoundException