Class GeoMexSingleCellDataLoaderConfigurerTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.loader.expression.geo.singleCell.GeoMexSingleCellDataLoaderConfigurerTest

@ContextConfiguration
@Tag("integration")
@NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/")
@ExtendWith(NetworkAvailableExtension.class)
public class GeoMexSingleCellDataLoaderConfigurerTest
extends BaseTest5

Constructor Summary

Constructors

Constructor	Description
GeoMexSingleCellDataLoaderConfigurerTest()

Method Summary

Modifier and Type	Method	Description
void	testDetect10xUnfiltered10XData()
void	testGSE132355()
void	testGSE143355()
void	testGSE178226()
void	testGSE198033()
void	testGSE217511()	This is an older single-cell dataset with many typos in the GEO record.
void	testGSE221042()
void	testGSE223423()
void	testGSE255369()
void	testGSE269482()
void	testGSE280175()
void	testGSE295078()
void	testParallelFiltering()

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GeoMexSingleCellDataLoaderConfigurerTest

public GeoMexSingleCellDataLoaderConfigurerTest()

Method Details

testDetect10xUnfiltered10XData

@Test
public void testDetect10xUnfiltered10XData()
                                    throws IOException

Throws:

IOException

testGSE269482

@Test
public void testGSE269482()
                   throws IOException,
NoSingleCellDataFoundException

Throws:

IOException

NoSingleCellDataFoundException

testGSE217511

@Test
@Tag("slow")
public void testGSE217511()
                   throws IOException,
NoSingleCellDataFoundException

This is an older single-cell dataset with many typos in the GEO record.

Throws:

IOException

NoSingleCellDataFoundException

testGSE178226

@Test
@Tag("slow")
public void testGSE178226()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE280175

@Test
@Tag("slow")
public void testGSE280175()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE221042

@Test
@Tag("slow")
public void testGSE221042()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE223423

@Test
public void testGSE223423()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE143355

@Test
@Tag("slow")
public void testGSE143355()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE198033

@Test
public void testGSE198033()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE132355

@Test
@Tag("slow")
public void testGSE132355()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE295078

@Test
@Tag("slow")
public void testGSE295078()
                   throws NoSingleCellDataFoundException,
IOException

Throws:

NoSingleCellDataFoundException

IOException

testGSE255369

@Test
public void testGSE255369()
                   throws IOException

Throws:

IOException

testParallelFiltering

@Test
@Tag("slow")
public void testParallelFiltering()
                           throws IOException,
NoSingleCellDataFoundException

Throws:

IOException

NoSingleCellDataFoundException