Package ubic.gemma.core.loader.expression.singleCell

Class AbstractMexSingleCellDataLoaderConfigurerTest

java.lang.Object
ubic.gemma.core.loader.expression.singleCell.AbstractMexSingleCellDataLoaderConfigurerTest
public class AbstractMexSingleCellDataLoaderConfigurerTest extends Object
Unit tests for MEX directory resolution in AbstractMexSingleCellDataLoaderConfigurer, in particular the fallback that locates the triplet under a raw 10x Cell Ranger outs/filtered_feature_bc_matrix nesting.

  • Field Details

    • tmp

      public final org.junit.rules.TemporaryFolder tmp

  • Constructor Details

    • AbstractMexSingleCellDataLoaderConfigurerTest

      public AbstractMexSingleCellDataLoaderConfigurerTest()

  • Method Details

    • whenTripletIsDirectlyInSampleDir_thenItIsUsed

      public void whenTripletIsDirectlyInSampleDir_thenItIsUsed() throws IOException
      Throws:
      IOException

    • whenTripletIsNestedUnderCellRangerOuts_thenItIsResolved

      public void whenTripletIsNestedUnderCellRangerOuts_thenItIsResolved() throws IOException
      Throws:
      IOException

    • whenTripletIsNestedUnderRawMatrix_thenItIsResolved

      public void whenTripletIsNestedUnderRawMatrix_thenItIsResolved() throws IOException
      Throws:
      IOException

    • whenTripletIsMissingEntirely_thenItThrows

      public void whenTripletIsMissingEntirely_thenItThrows() throws IOException
      Throws:
      IOException