Class AnnDataSingleCellDataLoaderTest

java.lang.Object
ubic.gemma.core.util.test.BaseTest5
ubic.gemma.core.loader.expression.singleCell.AnnDataSingleCellDataLoaderTest
@ContextConfiguration public class AnnDataSingleCellDataLoaderTest extends BaseTest5

  • Constructor Details

    • AnnDataSingleCellDataLoaderTest

      public AnnDataSingleCellDataLoaderTest()

  • Method Details

    • testGSE225158

      @Test public void testGSE225158() throws IOException
      Throws:
      IOException

    • testSubsetOfGSE225158

      @Test public void testSubsetOfGSE225158() throws IOException
      Throws:
      IOException

    • testLoadSpecificSamples

      @Test public void testLoadSpecificSamples() throws IOException
      Throws:
      IOException

    • testLoadSampleInDifferentOrder

      @Test public void testLoadSampleInDifferentOrder() throws IOException
      Throws:
      IOException

    • testGSE216457

      @Tag("slow") @Test public void testGSE216457() throws IOException
      AnnData on-disk format was formalized in the 0.8.x series. This file was generated with 0.7.x.
      Throws:
      IOException

    • testRawDataset

      @Test public void testRawDataset() throws IOException
      Throws:
      IOException

    • testLayeredAnnDataFile

      @Test public void testLayeredAnnDataFile() throws IOException
      Throws:
      IOException

    • testUnrawAndTranspose

      @Tag("slow") @Test public void testUnrawAndTranspose() throws IOException
      This test exercise the ability of the Configurer to detect datasets that need to be unrawed and transposed.
      Throws:
      IOException