Package ubic.gemma.core.loader.expression.singleCell

Class AnnDataSingleCellDataLoaderTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseTest

ubic.gemma.core.loader.expression.singleCell.AnnDataSingleCellDataLoaderTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
public class AnnDataSingleCellDataLoaderTest
extends BaseTest

Field Summary

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
AnnDataSingleCellDataLoaderTest()

Method Summary

Modifier and Type	Method	Description
void	testGSE216457()	AnnData on-disk format was formalized in the 0.8.x series.
void	testGSE225158()
void	testLayeredAnnDataFile()
void	testLoadSampleInDifferentOrder()
void	testLoadSpecificSamples()
void	testRawDataset()
void	testSubsetOfGSE225158()
void	testUnrawAndTranspose()	This test exercise the ability of the Configurer to detect datasets that need to be unrawed and transposed.

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AnnDataSingleCellDataLoaderTest

public AnnDataSingleCellDataLoaderTest()

Method Details

testGSE225158

public void testGSE225158()
                   throws IOException

Throws:

IOException

testSubsetOfGSE225158

public void testSubsetOfGSE225158()
                           throws IOException

Throws:

IOException

testLoadSpecificSamples

public void testLoadSpecificSamples()
                             throws IOException

Throws:

IOException

testLoadSampleInDifferentOrder

public void testLoadSampleInDifferentOrder()
                                    throws IOException

Throws:

IOException

testGSE216457

public void testGSE216457()
                   throws IOException

AnnData on-disk format was formalized in the 0.8.x series. This file was generated with 0.7.x.

Throws:

IOException

testRawDataset

public void testRawDataset()
                    throws IOException

Throws:

IOException

testLayeredAnnDataFile

public void testLayeredAnnDataFile()
                            throws IOException

Throws:

IOException

testUnrawAndTranspose

public void testUnrawAndTranspose()
                           throws IOException

This test exercise the ability of the Configurer to detect datasets that need to be unrawed and transposed.

Throws:

IOException