Class SraFetcherTest

java.lang.Object

ubic.gemma.core.loader.expression.sra.SraFetcherTest

@ExtendWith(NetworkAvailableExtension.class)
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi")
public class SraFetcherTest
extends Object

Constructor Summary

Constructors

Constructor	Description
SraFetcherTest()

Method Summary

Modifier and Type	Method	Description
void	testFetch()
void	testFetchProject()
void	testFetchProjectRunInfo()
void	testFetchRunInfo()
void	testGSE165635()
void	testGSE230440()

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

SraFetcherTest

public SraFetcherTest()

Method Details

testFetch

@Test
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=sra&id=SRX12015965")
public void testFetch()
               throws IOException

Throws:

IOException

testFetchProject

@Test
public void testFetchProject()
                      throws IOException

Throws:

IOException

testFetchRunInfo

@Test
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=sra&id=SRX12015965")
public void testFetchRunInfo()
                      throws IOException

Throws:

IOException

testFetchProjectRunInfo

@Test
public void testFetchProjectRunInfo()
                             throws IOException

Throws:

IOException

testGSE230440

@Test
@Tag("slow")
public void testGSE230440()
                   throws IOException

Throws:

IOException

testGSE165635

@Test
@Tag("slow")
public void testGSE165635()
                   throws IOException

Throws:

IOException