Package ubic.gemma.core.loader.genome

Class FastaParserTest

java.lang.Object
junit.framework.Assert
junit.framework.TestCase
ubic.gemma.core.loader.genome.FastaParserTest
All Implemented Interfaces:
junit.framework.Test
public class FastaParserTest extends junit.framework.TestCase
Author:
pavlidis

  • Constructor Summary

    Constructors
    Constructor
    Description
    FastaParserTest()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    protected void
    setUp()
     
    void
    testParsecodelink()
     
    void
    testParseDoubleHeader()
     
    void
    testParseInputStream()
     
    void
    testParseInputStreamAffyTarget()
     
    void
    testParseMasked()
     
    void
    testParseNIA()
     

    Methods inherited from class junit.framework.TestCase

    assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertEquals, assertFalse, assertFalse, assertNotNull, assertNotNull, assertNotSame, assertNotSame, assertNull, assertNull, assertSame, assertSame, assertTrue, assertTrue, countTestCases, createResult, fail, fail, failNotEquals, failNotSame, failSame, format, getName, run, run, runBare, runTest, setName, tearDown, toString

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • FastaParserTest

      public FastaParserTest()

  • Method Details

    • testParsecodelink

      public void testParsecodelink() throws Exception
      Throws:
      Exception

    • testParseDoubleHeader

      public void testParseDoubleHeader() throws Exception
      Throws:
      Exception

    • testParseInputStream

      public void testParseInputStream() throws Exception
      Throws:
      Exception

    • testParseInputStreamAffyTarget

      public void testParseInputStreamAffyTarget() throws Exception
      Throws:
      Exception

    • testParseMasked

      public void testParseMasked() throws Exception
      Throws:
      Exception

    • testParseNIA

      public void testParseNIA() throws Exception
      Throws:
      Exception

    • setUp

      protected void setUp() throws Exception
      Overrides:
      setUp in class junit.framework.TestCase
      Throws:
      Exception