Class ArrayDesignFactory.Builder

java.lang.Object

ubic.gemma.core.util.test.fixture.ArrayDesignFactory.Builder

Enclosing class:

ArrayDesignFactory

public static final class ArrayDesignFactory.Builder
extends Object

Fluent builder for an ArrayDesign. All withXxx(...) methods return this for chaining. Single-use; call build() once.

Author:

Phase 3 (Vision section 3 - test-fixture rewrite)

Method Summary

Modifier and Type	Method	Description
ArrayDesign	build()	Build, persist, and return the AD.
ArrayDesignFactory.Builder	withName(String n)
ArrayDesignFactory.Builder	withProbes(int n)	Attach N composite sequences (probes) to the array design.
ArrayDesignFactory.Builder	withRandomProbeNames(boolean v)	If false, probes are named probeset_0, probeset_1, ...
ArrayDesignFactory.Builder	withSequences(boolean v)	If true, each probe is also given a BioSequence (persisted ahead of the AD).
ArrayDesignFactory.Builder	withShortName(String s)
ArrayDesignFactory.Builder	withTaxon(Taxon t)

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

withTaxon

public ArrayDesignFactory.Builder withTaxon(Taxon t)

withShortName

public ArrayDesignFactory.Builder withShortName(String s)

withName

public ArrayDesignFactory.Builder withName(String n)

withProbes

public ArrayDesignFactory.Builder withProbes(int n)

Attach N composite sequences (probes) to the array design. Default 0 (empty AD).

withSequences

public ArrayDesignFactory.Builder withSequences(boolean v)

If true, each probe is also given a BioSequence (persisted ahead of the AD). Default false - tests that just need probes for FK-shape don't pay the cost.

withRandomProbeNames

public ArrayDesignFactory.Builder withRandomProbeNames(boolean v)

If false, probes are named probeset_0, probeset_1, ... Useful for tests that want deterministic names. Default true (random numeric suffix).

build

public ArrayDesign build()

Build, persist, and return the AD. Goes through SecurableBaseImmutableService.create(ArrayDesign) so the ACL-creation listener fires.